4965ebac1f74a433a5e409284d7145e6642edf09 dschmelt Wed Mar 10 12:05:17 2021 -0800 First commit for COVID browser intro refs #27174 diff --git src/hg/htdocs/goldenPath/help/covidBrowserIntro.html src/hg/htdocs/goldenPath/help/covidBrowserIntro.html new file mode 100644 index 0000000..6ece6eb --- /dev/null +++ src/hg/htdocs/goldenPath/help/covidBrowserIntro.html @@ -0,0 +1,46 @@ +<!DOCTYPE html> +<!--#set var="TITLE" value="Intro to SARS-CoV-2 Browser" --> +<!--#set var="ROOT" value="../.." --> + +<!-- Relative paths to support mirror sites with non-standard GB docs install --> +<!--#include virtual="$ROOT/inc/gbPageStart.html" --> + +<h1>Introduction to the SARS-CoV-2 Genome Browser</h1> +<p> +The UCSC Genome Browser is an open-source, interactive sequence visualization tool that +has been a cornerstone of genomics for more than 20 years; cited in more than 37,000 +scientific articles. It allows for cross referencing of research, clinical, +and epidemiology data against the SARS-CoV-2 reference genome. </p> + +<p> +This guide will go through some of the most important use cases of the SARS-CoV-2 Genome Browser. +For those who prefer a video explanation, we have</p> + +<h2>Orientation and Navigation</h2> +<p> +With more than 80 total datasets across the SARS-CoV-2 reference genome's nearly 30,000 RNA +bases, navigation is essential to finding the information you want to see. Below is an example +view of the Genome Browser with labeled sections highlighting the navigation, reference sequence, +annotations, and additional available track datasets below. + +<p class="text-center"> + <img class="text-center" src="../../images/covidBrowserIntroNav.png" + alt="Labeled orientation to the Genome Browser" width="499" height="299"> + <p class="gbsCaption text-center">This is a view of the SARS-CoV-2 Genome Browser with + labeled elements to help with orientation.</p> +</p> + + +<h2>GENES</h2> + +<h2>VARS</h2> + +<h2>NEW DATA</h2> + +<h2>Genetic Contact Tracing with hgPhyloPlace</h2> + +<h2>API, SQL, Downloads</h2> + +<h2>Support Docs, Contact Us</h2> + +<!--#include virtual="$ROOT/inc/gbPageEnd.html" -->