6d336b54b093fad845c852d8f6bdd996372f2c2a
hiram
  Fri Mar 12 16:26:23 2021 -0800
there is no macFas5 gene set in version 103 refs #27194

diff --git src/hg/utils/automation/EnsGeneAutomate.pm src/hg/utils/automation/EnsGeneAutomate.pm
index bcb8f2a..da33901 100755
--- src/hg/utils/automation/EnsGeneAutomate.pm
+++ src/hg/utils/automation/EnsGeneAutomate.pm
@@ -10200,31 +10200,30 @@
 'GCA_000225785.1_LatCha1' => 'latimeria_chalumnae/Latimeria_chalumnae.LatCha1.103.gtf.gz',
 'GCF_000225785.1_LatCha1' => 'latimeria_chalumnae/Latimeria_chalumnae.LatCha1.103.gtf.gz',
 'latCha1' => 'latimeria_chalumnae/Latimeria_chalumnae.LatCha1.103.gtf.gz',
 'GCA_001604755.1_Lepidothrix_coronata-1.0' => 'lepidothrix_coronata/Lepidothrix_coronata.Lepidothrix_coronata-1.0.103.gtf.gz',
 'GCF_001604755.1_Lepidothrix_coronata-1.0' => 'lepidothrix_coronata/Lepidothrix_coronata.Lepidothrix_coronata-1.0.103.gtf.gz',
 'GCA_000242695.1_LepOcu1' => 'lepisosteus_oculatus/Lepisosteus_oculatus.LepOcu1.103.gtf.gz',
 'GCF_000242695.1_LepOcu1' => 'lepisosteus_oculatus/Lepisosteus_oculatus.LepOcu1.103.gtf.gz',
 'lepOcu1' => 'lepisosteus_oculatus/Lepisosteus_oculatus.LepOcu1.103.gtf.gz',
 'GCA_002197715.1_LonStrDom1' => 'lonchura_striata_domestica/Lonchura_striata_domestica.LonStrDom1.103.gtf.gz',
 'GCA_000001905.1_Loxafr3.0' => 'loxodonta_africana/Loxodonta_africana.loxAfr3.103.gtf.gz',
 'GCF_000001905.1_Loxafr3.0' => 'loxodonta_africana/Loxodonta_africana.loxAfr3.103.gtf.gz',
 'loxAfr3' => 'loxodonta_africana/Loxodonta_africana.loxAfr3.103.gtf.gz',
 'GCA_007474595.1_mLynCan4_v1.p' => 'lynx_canadensis/Lynx_canadensis.mLynCan4_v1.p.103.gtf.gz',
 'GCF_007474595.1_mLynCan4_v1.p' => 'lynx_canadensis/Lynx_canadensis.mLynCan4_v1.p.103.gtf.gz',
 'GCF_000364345.1_Macaca_fascicularis_5.0' => 'macaca_fascicularis/Macaca_fascicularis.Macaca_fascicularis_5.0.103.gtf.gz',
-'macFas5' => 'macaca_fascicularis/Macaca_fascicularis.Macaca_fascicularis_5.0.103.gtf.gz',
 'GCA_011100615.1_Macaca_fascicularis_6.0' => 'macaca_fascicularis/Macaca_fascicularis.Macaca_fascicularis_6.0.103.gtf.gz',
 'GCA_003339765.3_Mmul_10' => 'macaca_mulatta/Macaca_mulatta.Mmul_10.103.gtf.gz',
 'GCF_003339765.1_Mmul_10' => 'macaca_mulatta/Macaca_mulatta.Mmul_10.103.gtf.gz',
 'rheMac10' => 'macaca_mulatta/Macaca_mulatta.Mmul_10.103.gtf.gz',
 'GCA_000956065.1_Mnem_1.0' => 'macaca_nemestrina/Macaca_nemestrina.Mnem_1.0.103.gtf.gz',
 'GCF_000956065.1_Mnem_1.0' => 'macaca_nemestrina/Macaca_nemestrina.Mnem_1.0.103.gtf.gz',
 'macNem1' => 'macaca_nemestrina/Macaca_nemestrina.Mnem_1.0.103.gtf.gz',
 'GCA_009741485.1_mCya_1.0' => 'malurus_cyaneus_samueli/Malurus_cyaneus_samueli.mCya_1.0.103.gtf.gz',
 'GCA_001715985.2_ASM171598v2' => 'manacus_vitellinus/Manacus_vitellinus.ASM171598v2.103.gtf.gz',
 'GCA_000951045.1_Mleu.le_1.0' => 'mandrillus_leucophaeus/Mandrillus_leucophaeus.Mleu.le_1.0.103.gtf.gz',
 'GCF_000951045.1_Mleu.le_1.0' => 'mandrillus_leucophaeus/Mandrillus_leucophaeus.Mleu.le_1.0.103.gtf.gz',
 'manLeu1' => 'mandrillus_leucophaeus/Mandrillus_leucophaeus.Mleu.le_1.0.103.gtf.gz',
 'GCA_001458135.1_marMar2.1' => 'marmota_marmota_marmota/Marmota_marmota_marmota.marMar2.1.103.gtf.gz',
 'GCF_001458135.1_marMar2.1' => 'marmota_marmota_marmota/Marmota_marmota_marmota.marMar2.1.103.gtf.gz',
 'GCA_900324485.1_fMasArm1.1' => 'mastacembelus_armatus/Mastacembelus_armatus.fMasArm1.1.103.gtf.gz',
@@ -10746,31 +10745,30 @@
 'GCA_000225785.1_LatCha1' => 'latimeria_chalumnae/pep/Latimeria_chalumnae.LatCha1.pep.all.fa.gz',
 'GCF_000225785.1_LatCha1' => 'latimeria_chalumnae/pep/Latimeria_chalumnae.LatCha1.pep.all.fa.gz',
 'latCha1' => 'latimeria_chalumnae/pep/Latimeria_chalumnae.LatCha1.pep.all.fa.gz',
 'GCA_001604755.1_Lepidothrix_coronata-1.0' => 'lepidothrix_coronata/pep/Lepidothrix_coronata.Lepidothrix_coronata-1.0.pep.all.fa.gz',
 'GCF_001604755.1_Lepidothrix_coronata-1.0' => 'lepidothrix_coronata/pep/Lepidothrix_coronata.Lepidothrix_coronata-1.0.pep.all.fa.gz',
 'GCA_000242695.1_LepOcu1' => 'lepisosteus_oculatus/pep/Lepisosteus_oculatus.LepOcu1.pep.all.fa.gz',
 'GCF_000242695.1_LepOcu1' => 'lepisosteus_oculatus/pep/Lepisosteus_oculatus.LepOcu1.pep.all.fa.gz',
 'lepOcu1' => 'lepisosteus_oculatus/pep/Lepisosteus_oculatus.LepOcu1.pep.all.fa.gz',
 'GCA_002197715.1_LonStrDom1' => 'lonchura_striata_domestica/pep/Lonchura_striata_domestica.LonStrDom1.pep.all.fa.gz',
 'GCA_000001905.1_Loxafr3.0' => 'loxodonta_africana/pep/Loxodonta_africana.loxAfr3.pep.all.fa.gz',
 'GCF_000001905.1_Loxafr3.0' => 'loxodonta_africana/pep/Loxodonta_africana.loxAfr3.pep.all.fa.gz',
 'loxAfr3' => 'loxodonta_africana/pep/Loxodonta_africana.loxAfr3.pep.all.fa.gz',
 'GCA_007474595.1_mLynCan4_v1.p' => 'lynx_canadensis/pep/Lynx_canadensis.mLynCan4_v1.p.pep.all.fa.gz',
 'GCF_007474595.1_mLynCan4_v1.p' => 'lynx_canadensis/pep/Lynx_canadensis.mLynCan4_v1.p.pep.all.fa.gz',
 'GCF_000364345.1_Macaca_fascicularis_5.0' => 'macaca_fascicularis/pep/Macaca_fascicularis.Macaca_fascicularis_5.0.pep.all.fa.gz',
-'macFas5' => 'macaca_fascicularis/pep/Macaca_fascicularis.Macaca_fascicularis_5.0.pep.all.fa.gz',
 'GCA_011100615.1_Macaca_fascicularis_6.0' => 'macaca_fascicularis/pep/Macaca_fascicularis.Macaca_fascicularis_6.0.pep.all.fa.gz',
 'GCA_003339765.3_Mmul_10' => 'macaca_mulatta/pep/Macaca_mulatta.Mmul_10.pep.all.fa.gz',
 'GCF_003339765.1_Mmul_10' => 'macaca_mulatta/pep/Macaca_mulatta.Mmul_10.pep.all.fa.gz',
 'rheMac10' => 'macaca_mulatta/pep/Macaca_mulatta.Mmul_10.pep.all.fa.gz',
 'GCA_000956065.1_Mnem_1.0' => 'macaca_nemestrina/pep/Macaca_nemestrina.Mnem_1.0.pep.all.fa.gz',
 'GCF_000956065.1_Mnem_1.0' => 'macaca_nemestrina/pep/Macaca_nemestrina.Mnem_1.0.pep.all.fa.gz',
 'macNem1' => 'macaca_nemestrina/pep/Macaca_nemestrina.Mnem_1.0.pep.all.fa.gz',
 'GCA_009741485.1_mCya_1.0' => 'malurus_cyaneus_samueli/pep/Malurus_cyaneus_samueli.mCya_1.0.pep.all.fa.gz',
 'GCA_001715985.2_ASM171598v2' => 'manacus_vitellinus/pep/Manacus_vitellinus.ASM171598v2.pep.all.fa.gz',
 'GCA_000951045.1_Mleu.le_1.0' => 'mandrillus_leucophaeus/pep/Mandrillus_leucophaeus.Mleu.le_1.0.pep.all.fa.gz',
 'GCF_000951045.1_Mleu.le_1.0' => 'mandrillus_leucophaeus/pep/Mandrillus_leucophaeus.Mleu.le_1.0.pep.all.fa.gz',
 'manLeu1' => 'mandrillus_leucophaeus/pep/Mandrillus_leucophaeus.Mleu.le_1.0.pep.all.fa.gz',
 'GCA_001458135.1_marMar2.1' => 'marmota_marmota_marmota/pep/Marmota_marmota_marmota.marMar2.1.pep.all.fa.gz',
 'GCF_001458135.1_marMar2.1' => 'marmota_marmota_marmota/pep/Marmota_marmota_marmota.marMar2.1.pep.all.fa.gz',
 'GCA_900324485.1_fMasArm1.1' => 'mastacembelus_armatus/pep/Mastacembelus_armatus.fMasArm1.1.pep.all.fa.gz',
@@ -11293,31 +11291,30 @@
 'GCF_000225785.1_LatCha1' => 'latimeria_chalumnae_core_103_1',
 'latCha1' => 'latimeria_chalumnae_core_103_1',
 'GCA_001604755.1_Lepidothrix_coronata-1.0' => 'lepidothrix_coronata_core_103_1',
 'GCF_001604755.1_Lepidothrix_coronata-1.0' => 'lepidothrix_coronata_core_103_1',
 'GCA_000242695.1_LepOcu1' => 'lepisosteus_oculatus_core_103_1',
 'GCF_000242695.1_LepOcu1' => 'lepisosteus_oculatus_core_103_1',
 'lepOcu1' => 'lepisosteus_oculatus_core_103_1',
 'GCA_002197715.1_LonStrDom1' => 'lonchura_striata_domestica_core_103_1',
 'GCA_000001905.1_Loxafr3.0' => 'loxodonta_africana_core_103_3',
 'GCF_000001905.1_Loxafr3.0' => 'loxodonta_africana_core_103_3',
 'loxAfr3' => 'loxodonta_africana_core_103_3',
 'GCA_007474595.1_mLynCan4_v1.p' => 'lynx_canadensis_core_103_41',
 'GCF_007474595.1_mLynCan4_v1.p' => 'lynx_canadensis_core_103_41',
 'GCA_011100615.1_Macaca_fascicularis_6.0' => 'macaca_fascicularis_core_103_6',
 'GCF_000364345.1_Macaca_fascicularis_5.0' => 'macaca_fascicularis_core_103_6',
-'macFas5' => 'macaca_fascicularis_core_103_6',
 'GCA_003339765.3_Mmul_10' => 'macaca_mulatta_core_103_10',
 'GCF_003339765.1_Mmul_10' => 'macaca_mulatta_core_103_10',
 'rheMac10' => 'macaca_mulatta_core_103_10',
 'GCA_000956065.1_Mnem_1.0' => 'macaca_nemestrina_core_103_1',
 'GCF_000956065.1_Mnem_1.0' => 'macaca_nemestrina_core_103_1',
 'macNem1' => 'macaca_nemestrina_core_103_1',
 'GCA_009741485.1_mCya_1.0' => 'malurus_cyaneus_samueli_core_103_1',
 'GCA_001715985.2_ASM171598v2' => 'manacus_vitellinus_core_103_2',
 'GCA_000951045.1_Mleu.le_1.0' => 'mandrillus_leucophaeus_core_103_1',
 'GCF_000951045.1_Mleu.le_1.0' => 'mandrillus_leucophaeus_core_103_1',
 'manLeu1' => 'mandrillus_leucophaeus_core_103_1',
 'GCA_001458135.1_marMar2.1' => 'marmota_marmota_marmota_core_103_21',
 'GCF_001458135.1_marMar2.1' => 'marmota_marmota_marmota_core_103_21',
 'GCA_900324485.1_fMasArm1.1' => 'mastacembelus_armatus_core_103_12',
 'GCA_900324485.2_fMasArm1.2' => 'mastacembelus_armatus_core_103_12',