3c5d95387a55dd5571b5e0000a3d497c05db623f
markd
  Sat Mar 13 19:38:39 2021 -0800
import of GENCOCE VM24

diff --git src/hg/makeDb/schema/all.joiner src/hg/makeDb/schema/all.joiner
index 17a2694..66364c2 100644
--- src/hg/makeDb/schema/all.joiner
+++ src/hg/makeDb/schema/all.joiner
@@ -5773,30 +5773,126 @@
     mm10.wgEncodeGencodeAnnotationRemarkVM25.transcriptId dupeOk
     mm10.wgEncodeGencodeAttrsVM25.transcriptId minCheck=0.10
 
 identifier wgEncodeGencodeEntrezGeneVM25
 "Link together Gencode UniProt Support table with Attributes table"
     mm10.wgEncodeGencodeEntrezGeneVM25.transcriptId dupeOk
     mm10.wgEncodeGencodeEntrezGeneVM25.transcriptId minCheck=0.35
 
 identifier wgEncodeGencodeExonSupportVM25
 "Link together Gencode Exon Support table with Attributes table"
     mm10.wgEncodeGencodeExonSupportVM25.transcriptId dupeOk
     mm10.wgEncodeGencodeAttrsVM25.transcriptId minCheck=0.90
 
 # end Gencode VM25
 
+# begin Gencode VM26
+
+# gencode genePred tables with no associations
+# wgEncodeGencodePolyaVM26
+# wgEncodeGencode2wayConsPseudoVM26
+
+# gencode genePred tables with joining through wgEncodeGencodeAttrsVM26
+identifier wgEncodeGencodeBasicAttrsVM26
+"Link together Gencode Basic Table with Attributes table"
+    mm39.wgEncodeGencodeAttrsVM26.transcriptId
+    mm39.wgEncodeGencodeBasicVM26.name
+
+identifier wgEncodeGencodeCompAttrsVM26
+"Link together Gencode Comprehensive Table with Attributes table"
+    mm39.wgEncodeGencodeAttrsVM26.transcriptId
+    mm39.wgEncodeGencodeCompVM26.name
+
+identifier wgEncodeGencodePseudoGeneAttrsVM26
+"Link together Gencode PseudoGene Table with Attributes table"
+    mm39.wgEncodeGencodeAttrsVM26.transcriptId
+    mm39.wgEncodeGencodePseudoGeneVM26.name
+
+# gencode association tables (joined through wgEncodeGencodeAttrsVM26)
+identifier wgEncodeGencodeGeneSourceVM26
+"Link together Gencode Gene Source table with Attributes table"
+    mm39.wgEncodeGencodeGeneSourceVM26.geneId
+    mm39.wgEncodeGencodeAttrsVM26.geneId
+
+identifier wgEncodeGencodeGeneSymbolVM26
+"Link together Gencode gene symbol table with Attributes table"
+    mm39.wgEncodeGencodeGeneSymbolVM26.transcriptId dupeOk
+    mm39.wgEncodeGencodeAttrsVM26.transcriptId minCheck=0.20
+
+identifier wgEncodeGencodePdbVM26
+"Link together Gencode Pdb table with Attributes table"
+    mm39.wgEncodeGencodePdbVM26.transcriptId dupeOk
+    mm39.wgEncodeGencodeAttrsVM26.transcriptId minCheck=0.015
+
+identifier wgEncodeGencodePubMedVM26
+"Link together Gencode Pubmed table with Attributes table"
+    mm39.wgEncodeGencodePubMedVM26.transcriptId dupeOk
+    mm39.wgEncodeGencodeAttrsVM26.transcriptId  minCheck=0.63
+
+identifier wgEncodeGencodeRefSeqVM26
+"Link together Gencode RefSeq table with Attributes table"
+    mm39.wgEncodeGencodeRefSeqVM26.transcriptId dupeOk
+    mm39.wgEncodeGencodeAttrsVM26.transcriptId minCheck=0.05
+
+identifier wgEncodeGencodeRefSeqToRefGeneVM26
+"Link together Gencode RefSeq table with refGene track"
+    mm39.wgEncodeGencodeRefSeqVM26.rnaAcc dupeOk chopAfter=.
+    mm39.refGene.name minCheck=0.77
+
+identifier wgEncodeGencodeTagVM26
+"Link together Gencode Tag table with Attributes table"
+    mm39.wgEncodeGencodeTagVM26.transcriptId dupeOk
+    mm39.wgEncodeGencodeAttrsVM26.transcriptId minCheck=0.36
+    mm39.wgEncodeGencodeRefSeqVM26.transcriptId minCheck=0.9
+
+identifier wgEncodeGencodeTranscriptSourceVM26
+"Link together Gencode Transcript Source table with Attributes table"
+    mm39.wgEncodeGencodeTranscriptSourceVM26.transcriptId
+    mm39.wgEncodeGencodeAttrsVM26.transcriptId
+
+identifier wgEncodeGencodeTranscriptSupportVM26
+"Link together Gencode Transcript Support table with Attributes table"
+    mm39.wgEncodeGencodeTranscriptSupportVM26.transcriptId dupeOk
+    mm39.wgEncodeGencodeAttrsVM26.transcriptId minCheck=0.08
+
+identifier wgEncodeGencodeTranscriptionSupportLevelVM26
+"Link together Gencode Transcription Support Level table with Attributes table"
+    mm39.wgEncodeGencodeTranscriptionSupportLevelVM26.transcriptId dupeOk
+    mm39.wgEncodeGencodeAttrsVM26.transcriptId minCheck=0.30
+
+identifier wgEncodeGencodeUniProtVM26
+"Link together Gencode UniProt Support table with Attributes table"
+    mm39.wgEncodeGencodeUniProtVM26.transcriptId dupeOk
+    mm39.wgEncodeGencodeAttrsVM26.transcriptId minCheck=0.35
+
+identifier wgEncodeGencodeAnnotationRemarkVM26
+"Link together Gencode Annotation Remark table with Attributes table"
+    mm39.wgEncodeGencodeAnnotationRemarkVM26.transcriptId dupeOk
+    mm39.wgEncodeGencodeAttrsVM26.transcriptId minCheck=0.10
+
+identifier wgEncodeGencodeEntrezGeneVM26
+"Link together Gencode UniProt Support table with Attributes table"
+    mm39.wgEncodeGencodeEntrezGeneVM26.transcriptId dupeOk
+    mm39.wgEncodeGencodeEntrezGeneVM26.transcriptId minCheck=0.35
+
+identifier wgEncodeGencodeExonSupportVM26
+"Link together Gencode Exon Support table with Attributes table"
+    mm39.wgEncodeGencodeExonSupportVM26.transcriptId dupeOk
+    mm39.wgEncodeGencodeAttrsVM26.transcriptId minCheck=0.38
+
+# end Gencode VM26
+
 # begin Gencode V35 (2020 reorganization quick change)
 identifier gencodeAnnotV35
 "Link together Gencode Annotation Table with Attributes table"
     $gbd.gencodeAttrsV35.transcriptId
     $gbd.gencodeGeneSymbolV35.transcriptId 
     $gbd.gencodePdbV35.transcriptId 
     $gbd.gencodePubMedV35.transcriptId 
     $gbd.gencodeRefSeqV35.transcriptId 
     $gbd.gencodeTagV35.transcriptId 
     $gbd.gencodeRefSeqV35.transcriptId minCheck=0.9
     $gbd.gencodeTranscriptSourceV35.transcriptId minCheck=0.9
     $gbd.gencodeTranscriptSupportV35.transcriptId 
     $gbd.gencodeTranscriptionSupportLevelV35.transcriptId 
     $gbd.gencodeUniProtV35.transcriptId 
     $gbd.gencodeAnnotationRemarkV35.transcriptId  minCheck=0.9