dc6ddf665daba39f0d4aac9c83e2d0764da8cf3b
markd
  Fri Mar 12 20:48:48 2021 -0800
import of gencodeV37lift37

diff --git src/hg/makeDb/doc/mm39/gencode.txt src/hg/makeDb/doc/mm39/gencode.txt
new file mode 100644
index 0000000..522ac6f
--- /dev/null
+++ src/hg/makeDb/doc/mm39/gencode.txt
@@ -0,0 +1,34 @@
+##############################################################################
+2021-03-12: import of UCSC GENCODE group processing of GENCODE VM26 (markd)
+    # edit hg/makeDb/outside/gencode/gencodeLoad.mk to set release and ensembl versions
+    # download, build and load tables
+    mkdir -p /hive/data/genomes/mm39/bed/gencodeVM26
+    pushd /hive/data/genomes/mm39/bed/gencodeVM26
+
+    (time nice make -j 10 -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk) >&build.1.out&
+
+    # compare tables from previous release to see if number changed makes
+    # sense.  Results are in gencode-cmp.tsv
+
+    # generate trackDb and joiner blurb
+    pushd ~/kent/src/hg/makeDb/trackDb
+    ../../makeDb/outside/gencode/gencodeGenerateTrackDbs mm39 M26 103 'Feb 2021'
+
+    # If being pushed public, update 'Release Notes' in
+    # mouse/mm39/wgEncodeGencodeSuper.html
+
+    # edit human/mm39/trackDb.gencode.ra to add new .ra file include
+    make DBS=mm39
+
+    ## only if being pushed to RR:
+    # edit all.joiner to add ~/tmp/gencodeVM26.joiner
+    # verify with:
+    pushd /hive/data/genomes/mm39/bed/gencodeVM26
+    make  -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck
+
+    # check tracks in browser sandbox
+    # commit all
+    make DBS=mm39 alpha
+    # if pushing public: add ticket and MARK QA READY
+
+##############################################################################