Commits for angie

v413_preview2 to v413_base (2021-04-05 to 2021-04-12) v413

44fc09ac64d99b7426d53102d4aa972509f50644 Wed Apr 7 19:47:33 2021 -0700

• Oops, overdue adding this work done over a year ago to git.
  • src/hg/makeDb/doc/hg38/grcH38P13.txt - lines changed 383, context: html, text, full: html, text

21e42695bd70f58fcd48b6080764a5c2ddad907a Wed Apr 7 19:50:25 2021 -0700

• When a row has a million columns, throwing words[] on the stack just won't do. Alloc the array once and use for all rows.
  • src/hg/utils/vcfRenameAndPrune/vcfRenameAndPrune.c - lines changed 7, context: html, text, full: html, text
  • src/utils/vcfFilter/vcfFilter.c - lines changed 9, context: html, text, full: html, text

4f93d78f61f85b8b7553e1ea8afb033b8db78d03 Thu Apr 8 15:23:24 2021 -0700

• Adding steps for updating hg13 files & tracks to GRCh38.p13 -- some steps done, most not yet.
  • src/hg/makeDb/doc/hg38/patchUpdate.13.txt - lines changed 771, context: html, text, full: html, text

8b379e58f89d4a779e768f8c41b042bda714d101 Thu Apr 8 15:26:18 2021 -0700

• Print out nearest neighbor & lineage for each sample in ascii tree (requested by Joe deRisi).
  • src/hg/hgPhyloPlace/phyloPlace.c - lines changed 46, context: html, text, full: html, text