68d6d9b391f13a9f09724ee7943e60ebf1df108b
hiram
  Wed Apr 7 10:07:26 2021 -0700
add definitions for sheep/GCF_002742125.1 rn7 and xenTro10 refs #27321

diff --git src/hg/makeDb/trackDb/human/chainNetVertebrate.ra src/hg/makeDb/trackDb/human/chainNetVertebrate.ra
index 5af17ee..1553653 100644
--- src/hg/makeDb/trackDb/human/chainNetVertebrate.ra
+++ src/hg/makeDb/trackDb/human/chainNetVertebrate.ra
@@ -1,21 +1,21 @@
 track vertebrateChainNet
 compositeTrack on
 shortLabel Vertebrate Chain/Net
 longLabel Non-placental Vertebrate Genomes, Chain and Net Alignments
 subGroup1 view Views chain=Chains net=Nets
-subGroup2 species Species s000=Wallaby s001=Wallaby s002=Tasmanian_devil s003=Opossum s004=Platypus s005=Platypus s006=Turkey s007a=Turkey s007b=Japanese_quail s008a=Chicken s008b=Chicken s009=Chicken s010=Chicken s011=Mallard_duck s012=Scarlet_macaw s013=Medium_ground_finch s014=White-throated_sparrow s015=Collared_flycatcher s016=Golden_eagle s017=Peregrine_falcon s018=Saker_falcon s019=Rock_pigeon s020=Parrot s021=Budgerigar s022=Tibetan_ground_jay s023=Zebra_finch s024=Zebra_finch s025=American_alligator s026=Chinese_alligator s027=Lizard s028=Lizard s028b=Garter_snake s029a=Axolotl s029b=X._tropicalis s030=X._tropicalis s031=X._tropicalis s032=X._tropicalis s033=X._tropicalis s034=African_clawed_frog s035=Spiny_softshell_turtle s036=Chinese_softshell_turtle s037=Painted_turtle s038=Painted_turtle s039=Green_seaturtle s040=Coelacanth s041=Spotted_gar s042=Mexican_tetra_(cavefish) s043=Zebrafish s044=Zebrafish s045=Zebrafish s046=Zebrafish s047=Zebrafish s048=Atlantic_cod s049=Stickleback s050=Southern_platyfish s051=Medaka s052=Pundamilia_nyererei s053=Zebra_mbuna s054=Princess_of_Burundi s055=Burton's_mouthbreeder s056=Nile_tilapia s057=Nile_tilapia s058=Nile_tilapia s059=Yellowbelly_pufferfish s060=Fugu s061=Fugu s062=Tetraodon s063=Tetraodon s064a=Lamprey s064b=Lamprey s065=Lamprey s066=Arctic_lamprey
+subGroup2 species Species s000=Wallaby s001=Wallaby s002=Tasmanian_devil s003=Opossum s004=Platypus s005=Platypus s006=Turkey s007a=Turkey s007b=Japanese_quail s008a=Chicken s008b=Chicken s009=Chicken s010=Chicken s011=Mallard_duck s012=Scarlet_macaw s013=Medium_ground_finch s014=White-throated_sparrow s015=Collared_flycatcher s016=Golden_eagle s017=Peregrine_falcon s018=Saker_falcon s019=Rock_pigeon s020=Parrot s021=Budgerigar s022=Tibetan_ground_jay s023=Zebra_finch s024=Zebra_finch s025=American_alligator s026=Chinese_alligator s027=Lizard s028=Lizard s028b=Garter_snake s029a=Axolotl s029b=X._tropicalis s029c=X._tropicalis s030=X._tropicalis s031=X._tropicalis s032=X._tropicalis s033=X._tropicalis s034=African_clawed_frog s035=Spiny_softshell_turtle s036=Chinese_softshell_turtle s037=Painted_turtle s038=Painted_turtle s039=Green_seaturtle s040=Coelacanth s041=Spotted_gar s042=Mexican_tetra_(cavefish) s043=Zebrafish s044=Zebrafish s045=Zebrafish s046=Zebrafish s047=Zebrafish s048=Atlantic_cod s049=Stickleback s050=Southern_platyfish s051=Medaka s052=Pundamilia_nyererei s053=Zebra_mbuna s054=Princess_of_Burundi s055=Burton's_mouthbreeder s056=Nile_tilapia s057=Nile_tilapia s058=Nile_tilapia s059=Yellowbelly_pufferfish s060=Fugu s061=Fugu s062=Tetraodon s063=Tetraodon s064a=Lamprey s064b=Lamprey s065=Lamprey s066=Arctic_lamprey
 subGroup3 clade Clade c00=mammalia c01=dinosauria c02=lepidosauria c03=amphibia c04=cryptodira c05=coelancanthimorpha c06=neopterygii c07=hyperoartia
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 color 0,0,0
 altColor 255,255,0
 type bed 3
 chainLinearGap loose
 chainMinScore 5000
 dimensions dimensionX=clade dimensionY=species
 sortOrder species=+ view=+ clade=+
 configurable on
 html vertebrateChainNet
 priority 9
@@ -279,35 +279,43 @@
         subTrack vertebrateChainNetViewchain off
         subGroups view=chain species=s028b clade=c02
         shortLabel $o_db Chain
         longLabel $o_Organism ($o_date) Chained Alignments
         type chain thaSir1
         otherDb thaSir1
 
         track chainAmbMex1
         subTrack vertebrateChainNetViewchain off
         subGroups view=chain species=s029a clade=c03
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date) Chained Alignments
         type chain ambMex1
         otherDb ambMex1
 
-        track chainXenTro9
+        track chainXenTro10
         subTrack vertebrateChainNetViewchain off
         subGroups view=chain species=s029b clade=c03
         shortLabel $o_db Chain
         longLabel $o_Organism ($o_date) Chained Alignments
+        type chain xenTro10
+        otherDb xenTro10
+
+        track chainXenTro9
+        subTrack vertebrateChainNetViewchain off
+        subGroups view=chain species=s029c clade=c03
+        shortLabel $o_db Chain
+        longLabel $o_Organism ($o_date) Chained Alignments
         type chain xenTro9
         otherDb xenTro9
 
         track chainXenTro7
         subTrack vertebrateChainNetViewchain off
         subGroups view=chain species=s030 clade=c03
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date) Chained Alignments
         type chain xenTro7
         otherDb xenTro7
 
         track chainXenTro3
         subTrack vertebrateChainNetViewchain off
         subGroups view=chain species=s031 clade=c03
         shortLabel $o_Organism Chain
@@ -861,35 +869,43 @@
         subTrack vertebrateChainNetViewnet off
         subGroups view=net species=s028b clade=c02
         shortLabel $o_db Net
         longLabel $o_Organism ($o_date) Alignment Net
         type netAlign anoCar1 chainAnoCar1
         otherDb thaSir1
 
         track netAmbMex1
         subTrack vertebrateChainNetViewnet off
         subGroups view=net species=s029a clade=c03
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date) Alignment Net
         type netAlign ambMex1 chainAmbMex1
         otherDb ambMex1
 
-        track netXenTro9
+        track netXenTro10
         subTrack vertebrateChainNetViewnet on
         subGroups view=net species=s029b clade=c03
         shortLabel $o_db Net
         longLabel $o_Organism ($o_date) Alignment Net
+        type netAlign xenTro10 chainXenTro10
+        otherDb xenTro10
+
+        track netXenTro9
+        subTrack vertebrateChainNetViewnet on
+        subGroups view=net species=s029c clade=c03
+        shortLabel $o_db Net
+        longLabel $o_Organism ($o_date) Alignment Net
         type netAlign xenTro9 chainXenTro9
         otherDb xenTro9
 
         track netXenTro7
         subTrack vertebrateChainNetViewnet off
         subGroups view=net species=s030 clade=c03
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date) Alignment Net
         type netAlign xenTro7 chainXenTro7
         otherDb xenTro7
 
         track netXenTro3
         subTrack vertebrateChainNetViewnet off
         subGroups view=net species=s031 clade=c03
         shortLabel $o_Organism Net