68d6d9b391f13a9f09724ee7943e60ebf1df108b hiram Wed Apr 7 10:07:26 2021 -0700 add definitions for sheep/GCF_002742125.1 rn7 and xenTro10 refs #27321 diff --git src/hg/makeDb/trackDb/human/chainNetVertebrate.ra src/hg/makeDb/trackDb/human/chainNetVertebrate.ra index 5af17ee..1553653 100644 --- src/hg/makeDb/trackDb/human/chainNetVertebrate.ra +++ src/hg/makeDb/trackDb/human/chainNetVertebrate.ra @@ -1,21 +1,21 @@ track vertebrateChainNet compositeTrack on shortLabel Vertebrate Chain/Net longLabel Non-placental Vertebrate Genomes, Chain and Net Alignments subGroup1 view Views chain=Chains net=Nets -subGroup2 species Species s000=Wallaby s001=Wallaby s002=Tasmanian_devil s003=Opossum s004=Platypus s005=Platypus s006=Turkey s007a=Turkey s007b=Japanese_quail s008a=Chicken s008b=Chicken s009=Chicken s010=Chicken s011=Mallard_duck s012=Scarlet_macaw s013=Medium_ground_finch s014=White-throated_sparrow s015=Collared_flycatcher s016=Golden_eagle s017=Peregrine_falcon s018=Saker_falcon s019=Rock_pigeon s020=Parrot s021=Budgerigar s022=Tibetan_ground_jay s023=Zebra_finch s024=Zebra_finch s025=American_alligator s026=Chinese_alligator s027=Lizard s028=Lizard s028b=Garter_snake s029a=Axolotl s029b=X._tropicalis s030=X._tropicalis s031=X._tropicalis s032=X._tropicalis s033=X._tropicalis s034=African_clawed_frog s035=Spiny_softshell_turtle s036=Chinese_softshell_turtle s037=Painted_turtle s038=Painted_turtle s039=Green_seaturtle s040=Coelacanth s041=Spotted_gar s042=Mexican_tetra_(cavefish) s043=Zebrafish s044=Zebrafish s045=Zebrafish s046=Zebrafish s047=Zebrafish s048=Atlantic_cod s049=Stickleback s050=Southern_platyfish s051=Medaka s052=Pundamilia_nyererei s053=Zebra_mbuna s054=Princess_of_Burundi s055=Burton's_mouthbreeder s056=Nile_tilapia s057=Nile_tilapia s058=Nile_tilapia s059=Yellowbelly_pufferfish s060=Fugu s061=Fugu s062=Tetraodon s063=Tetraodon s064a=Lamprey s064b=Lamprey s065=Lamprey s066=Arctic_lamprey +subGroup2 species Species s000=Wallaby s001=Wallaby s002=Tasmanian_devil s003=Opossum s004=Platypus s005=Platypus s006=Turkey s007a=Turkey s007b=Japanese_quail s008a=Chicken s008b=Chicken s009=Chicken s010=Chicken s011=Mallard_duck s012=Scarlet_macaw s013=Medium_ground_finch s014=White-throated_sparrow s015=Collared_flycatcher s016=Golden_eagle s017=Peregrine_falcon s018=Saker_falcon s019=Rock_pigeon s020=Parrot s021=Budgerigar s022=Tibetan_ground_jay s023=Zebra_finch s024=Zebra_finch s025=American_alligator s026=Chinese_alligator s027=Lizard s028=Lizard s028b=Garter_snake s029a=Axolotl s029b=X._tropicalis s029c=X._tropicalis s030=X._tropicalis s031=X._tropicalis s032=X._tropicalis s033=X._tropicalis s034=African_clawed_frog s035=Spiny_softshell_turtle s036=Chinese_softshell_turtle s037=Painted_turtle s038=Painted_turtle s039=Green_seaturtle s040=Coelacanth s041=Spotted_gar s042=Mexican_tetra_(cavefish) s043=Zebrafish s044=Zebrafish s045=Zebrafish s046=Zebrafish s047=Zebrafish s048=Atlantic_cod s049=Stickleback s050=Southern_platyfish s051=Medaka s052=Pundamilia_nyererei s053=Zebra_mbuna s054=Princess_of_Burundi s055=Burton's_mouthbreeder s056=Nile_tilapia s057=Nile_tilapia s058=Nile_tilapia s059=Yellowbelly_pufferfish s060=Fugu s061=Fugu s062=Tetraodon s063=Tetraodon s064a=Lamprey s064b=Lamprey s065=Lamprey s066=Arctic_lamprey subGroup3 clade Clade c00=mammalia c01=dinosauria c02=lepidosauria c03=amphibia c04=cryptodira c05=coelancanthimorpha c06=neopterygii c07=hyperoartia dragAndDrop subTracks visibility hide group compGeno noInherit on color 0,0,0 altColor 255,255,0 type bed 3 chainLinearGap loose chainMinScore 5000 dimensions dimensionX=clade dimensionY=species sortOrder species=+ view=+ clade=+ configurable on html vertebrateChainNet priority 9 @@ -279,35 +279,43 @@ subTrack vertebrateChainNetViewchain off subGroups view=chain species=s028b clade=c02 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain thaSir1 otherDb thaSir1 track chainAmbMex1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s029a clade=c03 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain ambMex1 otherDb ambMex1 - track chainXenTro9 + track chainXenTro10 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s029b clade=c03 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments + type chain xenTro10 + otherDb xenTro10 + + track chainXenTro9 + subTrack vertebrateChainNetViewchain off + subGroups view=chain species=s029c clade=c03 + shortLabel $o_db Chain + longLabel $o_Organism ($o_date) Chained Alignments type chain xenTro9 otherDb xenTro9 track chainXenTro7 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s030 clade=c03 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain xenTro7 otherDb xenTro7 track chainXenTro3 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s031 clade=c03 shortLabel $o_Organism Chain @@ -861,35 +869,43 @@ subTrack vertebrateChainNetViewnet off subGroups view=net species=s028b clade=c02 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign anoCar1 chainAnoCar1 otherDb thaSir1 track netAmbMex1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s029a clade=c03 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign ambMex1 chainAmbMex1 otherDb ambMex1 - track netXenTro9 + track netXenTro10 subTrack vertebrateChainNetViewnet on subGroups view=net species=s029b clade=c03 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net + type netAlign xenTro10 chainXenTro10 + otherDb xenTro10 + + track netXenTro9 + subTrack vertebrateChainNetViewnet on + subGroups view=net species=s029c clade=c03 + shortLabel $o_db Net + longLabel $o_Organism ($o_date) Alignment Net type netAlign xenTro9 chainXenTro9 otherDb xenTro9 track netXenTro7 subTrack vertebrateChainNetViewnet off subGroups view=net species=s030 clade=c03 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign xenTro7 chainXenTro7 otherDb xenTro7 track netXenTro3 subTrack vertebrateChainNetViewnet off subGroups view=net species=s031 clade=c03 shortLabel $o_Organism Net