d17d8aa5904721432031873676eb9fdef45a1c25 hiram Wed Apr 7 09:44:38 2021 -0700 adding sheep vs. hg38 refs #27231 diff --git src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra index 5d6b907..5103e00 100644 --- src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra +++ src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra @@ -1,170 +1,228 @@ ############################################################################## # GCA_901343595v1_MONAX5 - woodchuck - Marmota monax - mammal ############################################################################## track chainNetGCA_901343595v1 compositeTrack on shortLabel $o_Organism Chain/Net longLabel $o_Organism ($o_date), Chain and Net Alignments subGroup1 view Views chain=Chain net=Net dragAndDrop subTracks visibility hide group compGeno noInherit on priority 200.3 color 0,0,0 altColor 255,255,0 type bed 3 sortOrder view=+ matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91 matrixHeader A, C, G, T otherDb GCA_901343595v1 chainMinScore 3000 chainLinearGap medium spectrum on html chainNet track chainNetGCA_901343595v1Viewchain shortLabel Chain view chain visibility pack parent chainNetGCA_901343595v1 spectrum on track chainGCA_901343595v1_MONAX5 parent chainNetGCA_901343595v1Viewchain subGroups view=chain shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain GCA_901343595v1 html chainNet track chainNetGCA_901343595v1Viewnet shortLabel Net view net visibility dense parent chainNetGCA_901343595v1 track netGCA_901343595v1_MONAX5 parent chainNetGCA_901343595v1Viewnet subGroups view=net shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign GCA_901343595v1 chainGCA_901343595v1_MONAX5 html chainNet ############################################################################## # GCF_003668045.3 - Chinese hamster - Cricetulus griseus - taxId: 10029 - mammal ############################################################################## track chainNetGCF_003668045.3 compositeTrack on shortLabel Chinese hamster Chain/Net longLabel Chinese hamster (Jun. 2020 GCF_003668045.3_CriGri-PICRH-1.0), Chain and Net Alignments subGroup1 view Views chain=Chain net=Net dragAndDrop subTracks visibility hide group compGeno noInherit on priority 100.1 color 0,0,0 altColor 100,50,0 type bed 3 sortOrder view=+ matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91 chainLinearGap medium chainMinScore 3000 matrixHeader A, C, G, T otherDb GCF_003668045.3 html chainNet track chainNetGCF_003668045.3Viewchain shortLabel Chain view chain visibility pack parent chainNetGCF_003668045.3 spectrum on track chainGCF_003668045.3 parent chainNetGCF_003668045.3Viewchain subGroups view=chain shortLabel Chinese hamster Chain longLabel Chinese hamster (Jun. 2020 GCF_003668045.3_CriGri-PICRH-1.0) Chained Alignments type bigChain GCF_003668045.3 - bigDataUrl /gbdb/$D//bbi/chainNet/chainGCF_003668045.3.bb - linkDataUrl /gbdb/$D//bbi/chainNet/chainGCF_003668045.3Link.bb + bigDataUrl /gbdb/$D/bbi/chainNet/chainGCF_003668045.3.bb + linkDataUrl /gbdb/$D/bbi/chainNet/chainGCF_003668045.3Link.bb html chainNet track mafNetGCF_003668045.3Viewnet shortLabel Net view net visibility full parent chainNetGCF_003668045.3 track netGCF_003668045.3 parent mafNetGCF_003668045.3Viewnet subGroups view=net shortLabel Chinese hamster mafNet longLabel Chinese hamster (Jun. 2020 GCF_003668045.3_CriGri-PICRH-1.0) mafNet Alignment type bigMaf - bigDataUrl /gbdb/$D//bbi/chainNet/$D/.GCF_003668045.3.net.bb - summary /gbdb/$D//bbi/chainNet/$D/.GCF_003668045.3.net.summary.bb + bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCF_003668045.3.net.bb + summary /gbdb/$D/bbi/chainNet/$D.GCF_003668045.3.net.summary.bb speciesOrder GCF_003668045.3 html chainNet ############################################################################## # GCF_009829145.1 - lance-tailed manakin - Chiroxiphia lanceolata - taxId: 296741 - birds ############################################################################## track chainNetGCF_009829145.1 compositeTrack on shortLabel lance-tailed manakin Chain/Net longLabel lance-tailed manakin (Jan. 2020 GCF_009829145.1_bChiLan1.pri), Chain and Net Alignments subGroup1 view Views chain=Chain net=Net dragAndDrop subTracks visibility hide group compGeno noInherit on priority 100.1 color 0,0,0 altColor 100,50,0 type bed 3 sortOrder view=+ matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91 chainMinScore 3000 chainLinearGap medium matrixHeader A, C, G, T otherDb GCF_009829145.1 html chainNet track chainNetGCF_009829145.1Viewchain shortLabel Chain view chain visibility pack parent chainNetGCF_009829145.1 spectrum on track chainGCF_009829145.1 parent chainNetGCF_009829145.1Viewchain subGroups view=chain shortLabel lance-tailed manakin Chain longLabel lance-tailed manakin (Jan. 2020 GCF_009829145.1_bChiLan1.pri) Chained Alignments type bigChain GCF_009829145.1 - bigDataUrl /gbdb/$D//bbi/chainNet/chainGCF_009829145.1.bb - linkDataUrl /gbdb/$D//bbi/chainNet/chainGCF_009829145.1Link.bb + bigDataUrl /gbdb/$D/bbi/chainNet/chainGCF_009829145.1.bb + linkDataUrl /gbdb/$D/bbi/chainNet/chainGCF_009829145.1Link.bb html chainNet track mafNetGCF_009829145.1Viewnet shortLabel Net view net visibility full parent chainNetGCF_009829145.1 track netGCF_009829145.1 parent mafNetGCF_009829145.1Viewnet subGroups view=net shortLabel lance-tailed manakin mafNet longLabel lance-tailed manakin (Jan. 2020 GCF_009829145.1_bChiLan1.pri) mafNet Alignment type bigMaf - bigDataUrl /gbdb/$D//bbi/chainNet/$D/.GCF_009829145.1.net.bb - summary /gbdb/$D//bbi/chainNet/$D/.GCF_009829145.1.net.summary.bb + bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCF_009829145.1.net.bb + summary /gbdb/$D/bbi/chainNet/$D.GCF_009829145.1.net.summary.bb speciesOrder GCF_009829145.1 html chainNet +############################################################################## +# GCF_002742125.1 - Rambouillet sheep - Ovis aries - taxId: 9940 - mammal +############################################################################## +track chainNetGCF_002742125.1 +compositeTrack on +shortLabel Rambouillet sheep Chain/Net +longLabel Rambouillet sheep (Nov. 2017 GCF_002742125.1_Oar_rambouillet_v1.0), Chain and Net Alignments +subGroup1 view Views chain=Chain net=Net +dragAndDrop subTracks +visibility hide +group compGeno +noInherit on +priority 100.1 +color 0,0,0 +altColor 100,50,0 +type bed 3 +sortOrder view=+ +matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91 +chainMinScore 3000 +chainLinearGap medium +matrixHeader A, C, G, T +otherDb GCF_002742125.1 +html chainNet + + track chainNetGCF_002742125.1Viewchain + shortLabel Chain + view chain + visibility pack + parent chainNetGCF_002742125.1 + spectrum on + + track chainGCF_002742125.1 + parent chainNetGCF_002742125.1Viewchain + subGroups view=chain + shortLabel Rambouillet sheep Chain + longLabel Rambouillet sheep (Nov. 2017 GCF_002742125.1_Oar_rambouillet_v1.0) Chained Alignments + type bigChain GCF_002742125.1 + bigDataUrl /gbdb/$D/bbi/chainNet/chainGCF_002742125.1.bb + linkDataUrl /gbdb/$D/bbi/chainNet/chainGCF_002742125.1Link.bb + html chainNet + + track mafNetGCF_002742125.1Viewnet + shortLabel Net + view net + visibility full + parent chainNetGCF_002742125.1 + + track netGCF_002742125.1 + parent mafNetGCF_002742125.1Viewnet + subGroups view=net + shortLabel Rambouillet sheep mafNet + longLabel Rambouillet sheep (Nov. 2017 GCF_002742125.1_Oar_rambouillet_v1.0) mafNet Alignment + type bigMaf + bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCF_002742125.1.net.bb + summary /gbdb/$D/bbi/chainNet/$D.GCF_002742125.1.net.summary.bb + speciesOrder GCF_002742125.1 + html chainNet +