f74b788fef738178f0e2f85588f196c26d8f60e2 markd Wed Apr 7 10:58:29 2021 -0700 import of gencode VM27 pre-release diff --git src/hg/makeDb/outside/gencode/gencodeLoad.mk src/hg/makeDb/outside/gencode/gencodeLoad.mk index 0b6d44f..7ee3ef3 100644 --- src/hg/makeDb/outside/gencode/gencodeLoad.mk +++ src/hg/makeDb/outside/gencode/gencodeLoad.mk @@ -22,48 +22,48 @@ tmpExt = ${host}.${ppid}.tmp SHELL = bash -e export SHELLOPTS=pipefail ## # programs, etc ## mach = $(shell uname -m) ## # Release info and files from Sanger. # BEGIN EDIT THESE EACH RELEASE ## #preRelease = no preRelease = yes -db = hg38 +#db = hg38 #db = hg19 -#db = mm39 +db = mm39 #db = mm10 ifeq (${db},mm10) grcRefAssembly = GRCm38 verBase = M25 prevVer = M24 backmapTargetVer = M25 ver = ${verBase}lift37 gencodeOrg = Gencode_mouse ftpReleaseSubdir = release_${verBase}/GRCm38_mapping annGffTypeName = chr_patch_hapl_scaff.annotation isBackmap = yes else ifeq (${db},mm39) grcRefAssembly = GRCm39 - ver = M26 - prevVer = + ver = M27 + prevVer = M26 gencodeOrg = Gencode_mouse ftpReleaseSubdir = release_${ver} annGffTypeName = chr_patch_hapl_scaff.annotation else ifeq (${db},hg38) grcRefAssembly = GRCh38 ver = 38 prevVer = 37 gencodeOrg = Gencode_human ftpReleaseSubdir = release_${ver} annGffTypeName = chr_patch_hapl_scaff.annotation else ifeq (${db},hg19) grcRefAssembly = GRCh37 verBase = 37 ver = ${verBase}lift37 prevVer = 36lift37