7adb1d36b6e6f5ce11d882f348af4b1194ad17b6 max Wed Apr 7 01:05:10 2021 -0700 comitting a few changes to the uniprot pipeline to make it more stable for ottomatization, but also to get the filters to work correctly, refs #27069 diff --git src/hg/utils/otto/uniprot/bed12UniProtMut.as src/hg/utils/otto/uniprot/bed12UniProtMut.as index b77c610..484df53 100644 --- src/hg/utils/otto/uniprot/bed12UniProtMut.as +++ src/hg/utils/otto/uniprot/bed12UniProtMut.as @@ -1,24 +1,25 @@ table bed12UniProtMut "Browser extensible data (12 fields) plus information about uniProt mutation" ( string chrom; "Chromosome (or contig, scaffold, etc.)" uint chromStart; "Start position in chromosome" uint chromEnd; "End position in chromosome" string name; "Name of item" uint score; "Score from 0-1000" char[1] strand; "+ or -" uint thickStart; "Start of where display should be thick (start codon)" uint thickEnd; "End of where display should be thick (stop codon)" uint reserved; "Used as itemRgb as of 2004-11-22" int blockCount; "Number of blocks" int[blockCount] blockSizes; "Comma separated list of block sizes" int[blockCount] chromStarts; "Start positions relative to chromStart" + string status; "Status" lstring varType; "Variant Type" lstring diseases; "Diseases" lstring mutation; "Coding seq. mutation" lstring comments; "Comment" lstring variationId; "UniProt variant" lstring dbSnpId; "dbSNP" lstring uniProtId; "UniProt record" lstring pmids; "Source articles" )