7ca00d20d2c5c137d78f47d364b4d5be09acfb15
dschmelt
  Thu Mar 25 17:03:26 2021 -0700
Stashing 2 tools and documenting others for refs #27278

diff --git src/hg/htdocs/inc/gbPageStartHardcoded.html src/hg/htdocs/inc/gbPageStartHardcoded.html
index dbda073..e0a823f 100755
--- src/hg/htdocs/inc/gbPageStartHardcoded.html
+++ src/hg/htdocs/inc/gbPageStartHardcoded.html
@@ -62,67 +62,66 @@
             </ul>
           </li>
 
           <li class="menuparent" id="tools2"><a href="https://genome.ucsc.edu/cgi-bin/hgTracks">Genome Browser</a>
             <ul style="display: none; visibility: hidden;">
               <li class="first"><a id="configureMenuLink" href="https://genome.ucsc.edu/cgi-bin/hgTracks?hgTracksConfigPage=configure">Configure</a></li>
               <li><a id="trackSearchMenuLink" href="https://genome.ucsc.edu/cgi-bin/hgTracks?hgt_tSearch=track+search">Track Search</a></li>
               <li><a id="cartResetMenuLink" href="https://genome.ucsc.edu/cgi-bin/cartReset">Reset All User Settings</a></li>
             </ul>
           </li>
 
           <li class="menuparent" id="tools3"><span>Tools</span>
             <ul style="display: none; visibility: hidden;">
               <li class="first"><a id="blatMenuLink" href="https://genome.ucsc.edu/cgi-bin/hgBlat?command=start">Blat</a></li>
               <li><a id="tableBrowserMenuLink" href="https://genome.ucsc.edu/cgi-bin/hgTables">Table Browser</a></li>
+              <li><a id="ispMenuLink" href="https://genome.ucsc.edu/cgi-bin/hgPcr">In-Silico PCR</a></li>
+              <li><a id="liftOverMenuLink" href="https://genome.ucsc.edu/cgi-bin/hgLiftOver">LiftOver</a></li>
               <li><a id="vaiMenuLink" href="https://genome.ucsc.edu/cgi-bin/hgVai">Variant Annotation Integrator</a></li>
-              <li><a id="diMenuLink" href="https://genome.ucsc.edu/cgi-bin/hgIntegrator">Data Integrator</a></li>
-              <li><a title="Explore gene/protein interactions and pathways" id="interactionMenuLink" href="https://genome.ucsc.edu/cgi-bin/hgGeneGraph">Gene Interactions</a></li>
               <li><a id="gsMenuLink" href="https://genome.ucsc.edu/cgi-bin/hgNear">Gene Sorter</a></li>
+              <li><a id="diMenuLink" href="https://genome.ucsc.edu/cgi-bin/hgIntegrator">Data Integrator</a></li>
               <li><a id="ggMenuLink" href="https://genome.ucsc.edu/cgi-bin/hgGenome">Genome Graphs</a></li>
-              <li><a id="ispMenuLink" href="https://genome.ucsc.edu/cgi-bin/hgPcr">In-Silico PCR</a></li>
-              <li><a id="liftOverMenuLink" href="https://genome.ucsc.edu/cgi-bin/hgLiftOver">LiftOver</a></li>
-              <li><a id="visiGeneMenuLink" href="https://genome.ucsc.edu/cgi-bin/hgVisiGene">VisiGene</a></li>
               <li class="last"><a href="https://genome.ucsc.edu/util.html">Other Utilities</a></li>
             </ul>
           </li>
          
           <li class="menuparent" id="mirrors"><span>Mirrors</span>
             <ul style="display: none; visibility: hidden;">
               <li class="first"><a href="https://genome.ucsc.edu/mirror.html">Third Party Mirrors</a></li>
               <li><a href="https://genome.ucsc.edu/goldenPath/help/mirror.html">Mirroring Instructions</a></li>
             </ul>
           </li>
 
           <li class="menuparent" id="downloads"><span>Downloads</span>
             <ul style="display: none; visibility: hidden;">
               <li class="first"><a href="https://hgdownload.soe.ucsc.edu/downloads.html">Genome Data</a></li>
               <li><a href="https://hgdownload.soe.ucsc.edu/downloads.html#source_downloads">Source Code</a></li>
               <li><a href="https://genome-store.ucsc.edu">Genome Browser Store</a></li>
               <li><a href="https://hgdownload.soe.ucsc.edu/downloads.html#utilities_downloads">Utilities</a></li>
               <li class="last"><a href="https://genome.ucsc.edu/goldenPath/help/ftp.html">FTP</a></li>
               <li class="last"><a href="https://genome.ucsc.edu/goldenPath/help/mysql.html">MySQL Access</a></li>
 	      <li class="last"><a href="https://genome.ucsc.edu/goldenPath/help/api.html">REST API</a></li>
             </ul>
           </li>
           
           <li class="menuparent" id="myData"><span>My Data</span>
             <ul style="display: none; visibility: hidden;">
+              <li class="last"><a id="customTracksMenuLink" href="https://genome.ucsc.edu/cgi-bin/hgCustom">Custom Tracks</a></li>
               <li><a id="sessionsMenuLink" href="https://genome.ucsc.edu/cgi-bin/hgSession?hgS_doMainPage=1">My Sessions</a></li>
-              <li><a id="publicSessionsMenuLink" href="https://genome.ucsc.edu/cgi-bin/hgPublicSessions">Public Sessions</a></li>
               <li><a id="trackHubsMenuLink" href="https://genome.ucsc.edu/cgi-bin/hgHubConnect">Track Hubs</a></li>
-              <li class="last"><a id="customTracksMenuLink" href="https://genome.ucsc.edu/cgi-bin/hgCustom">Custom Tracks</a></li>
+              <li><a id="customCompositeMenuLink" href="../cgi-bin/hgCollection">Track Collection Builder</a></li>
+              <li><a id="publicSessionsMenuLink" href="https://genome.ucsc.edu/cgi-bin/hgPublicSessions">Public Sessions</a></li>
             </ul>
           </li>
 
           <li class="menuparent" id="help"><span>Help</span><ul style="display: none; visibility: hidden;">
               <li><a href="https://genome.ucsc.edu/FAQ/">FAQs & Search</a></li>
               <li><a href="https://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html">Browser Documentation</a></li>
               <li><a href="https://genome.ucsc.edu/training/index.html">Training</a></li>
               <li><a href="https://genome.ucsc.edu/contacts.html">Contact Us</a></li>
               <li class="last"><a href="http://genomewiki.ucsc.edu/" target="_blank">GenomeWiki</a></li>
             </ul>
           </li>
           
           <li class="menuparent last" id="aboutUs"><span>About Us</span>
             <ul style="display: none; visibility: hidden;">
               <li class="first odd"><a href="https://genome.ucsc.edu/goldenPath/newsarch.html">News</a></li>