7ca00d20d2c5c137d78f47d364b4d5be09acfb15
dschmelt
  Thu Mar 25 17:03:26 2021 -0700
Stashing 2 tools and documenting others for refs #27278

diff --git src/hg/htdocs/inc/globalNavBar.inc src/hg/htdocs/inc/globalNavBar.inc
index 9aca7fa..36c2c02 100644
--- src/hg/htdocs/inc/globalNavBar.inc
+++ src/hg/htdocs/inc/globalNavBar.inc
@@ -1,125 +1,123 @@
 <div id="main-menu-whole">
 
 		<div id="main-menu"><div id="block-nice_menus-1" class="clear-block block block-nice_menus">
 
 	<div class="upcorner"></div>
 	<div class="blockbg">
 		<div class="blockcontent">
 						<div class="content">
 
 <ul class="nice-menu nice-menu-down sf-js-enabled" id="nice-menu-1">
 
 <li class="first even" id="home"><a href="../index.html" ><span id="home-link">Home</span></a></li> 
 
 <li class="menuparent" id="tools1"><a href="../cgi-bin/hgGateway">Genomes</a>
 	<ul style="display: none; visibility: hidden;">
 	<li class="first"><a href="../cgi-bin/hgTracks?db=hg38&amp;position=lastDbPos">Human GRCh38/hg38</a></li>
 	<li><a href="../cgi-bin/hgTracks?db=hg19&amp;position=lastDbPos">Human GRCh37/hg19</a></li>
 	<li><a href="../cgi-bin/hgTracks?db=mm39&amp;position=lastDbPos">Mouse GRCm39/mm39</a></li>
 	<li><a href="../cgi-bin/hgTracks?db=mm10&amp;position=lastDbPos">Mouse GRCm38/mm10</a></li>
 	<li><a href="https://hgdownload.soe.ucsc.edu/hubs/">Genome Assembly Hubs</a></li>
 	<li><a href="../cgi-bin/hgTracks?db=wuhCor1&amp;position=lastDbPos">SARS-CoV-2 (COVID-19)</a></li>
 	<li class="last"><a href="../cgi-bin/hgGateway">Other</a></li>
         </ul>
 </li>
 
 <li class="menuparent" id="tools2"><a href="../cgi-bin/hgTracks">Genome Browser</a>
 	<ul style="display: none; visibility: hidden;">
 	<li class="first"><a id="configureMenuLink" href="../cgi-bin/hgTracks?hgTracksConfigPage=configure">Configure</a></li>
 	<li><a id="trackSearchMenuLink" href="../cgi-bin/hgTracks?hgt_tSearch=track+search">Track Search</a></li>
         <!-- OPTIONAL_RECOMMENDED_TRACK_SETS_MENU -->
 	<li><a id="cartResetMenuLink" href="../cgi-bin/cartReset">Reset All User Settings</a></li>
         </ul>
 </li>
 
 
 <li class="menuparent" id="tools3"><span>Tools</span>
 	<ul style="display: none; visibility: hidden;">
 	<li class="first"><a id="blatMenuLink" href="../cgi-bin/hgBlat?command=start">Blat</a></li>
+	<li><a id="ispMenuLink" href="../cgi-bin/hgPcr">In-Silico PCR</a></li>
 	<li><a id="tableBrowserMenuLink" href="../cgi-bin/hgTables">Table Browser</a></li>
+	<li><a id="liftOverMenuLink" href="../cgi-bin/hgLiftOver">LiftOver</a></li>
+	<li><a id="gsMenuLink" href="../cgi-bin/hgNear">Gene Sorter</a></li>
 	<li><a id="vaiMenuLink" href="../cgi-bin/hgVai">Variant Annotation Integrator</a></li>
 	<li><a id="diMenuLink" href="../cgi-bin/hgIntegrator">Data Integrator</a></li>
-	<li><a title="Explore gene/protein interactions and pathways" id="interactionMenuLink" href="../cgi-bin/hgGeneGraph">Gene Interactions</a></li>
-	<li><a id="gsMenuLink" href="../cgi-bin/hgNear">Gene Sorter</a></li>
 	<li><a id="ggMenuLink" href="../cgi-bin/hgGenome">Genome Graphs</a></li>
-	<li><a id="ispMenuLink" href="../cgi-bin/hgPcr">In-Silico PCR</a></li>
-	<li><a id="liftOverMenuLink" href="../cgi-bin/hgLiftOver">LiftOver</a></li>
-	<li><a id="visiGeneMenuLink" href="../cgi-bin/hgVisiGene">VisiGene</a></li>
 	<li class="last"><a href="../util.html">Other Utilities</a></li>
 	</ul>
 </li>
 <li class="menuparent" id="mirrors"><span>Mirrors</span>
 	<ul style="display: none; visibility: hidden;">
 	<li class="first"><a href="../mirror.html">Third Party Mirrors</a></li>
 	<li><a href="../goldenPath/help/mirror.html">Mirroring Instructions</a></li>
 	<!-- OPTIONAL_MIRROR_MENU -->
 	</ul>
 
 </li>
 <li class="menuparent" id="downloads"><span>Downloads</span>
 	<ul style="display: none; visibility: hidden;">
 	<li class="first"><a href="https://hgdownload.soe.ucsc.edu/downloads.html">Genome Data</a></li>
 	<li><a href="https://hgdownload.soe.ucsc.edu/downloads.html#source_downloads">Source Code</a></li>
   <li><a href="https://genome-store.ucsc.edu">Genome Browser Store</a></li>
 	<li><a href="https://hgdownload.soe.ucsc.edu/downloads.html#utilities_downloads">Utilities</a></li>
 	<li class="last"><a href="../goldenPath/help/ftp.html">FTP</a></li>
 	<li class="last"><a href="../goldenPath/help/mysql.html">MySQL Access</a></li>
 	<li class="last"><a href="../goldenPath/help/api.html">REST API</a></li>
 	</ul>
 </li>
 <li class="menuparent" id="myData"><span>My Data</span>
 	<ul style="display: none; visibility: hidden;">
+	<li><a id="customTracksMenuLink" href="../cgi-bin/hgCustom">Custom Tracks</a></li>
 	<li><a id="sessionsMenuLink" href="../cgi-bin/hgSession?hgS_doMainPage=1">My Sessions</a></li>
-	<li><a id="publicSessionsMenuLink" href="../cgi-bin/hgPublicSessions">Public Sessions</a></li>
 	<li><a id="trackHubsMenuLink" href="../cgi-bin/hgHubConnect">Track Hubs</a></li>
-	<li><a id="customTracksMenuLink" href="../cgi-bin/hgCustom">Custom Tracks</a></li>
-	<li class="last"><a id="customCompositeMenuLink" href="../cgi-bin/hgCollection">Track Collection Builder</a></li>
+	<li><a id="customCompositeMenuLink" href="../cgi-bin/hgCollection">Track Collection Builder</a></li>
+	<li class="last"><a id="publicSessionsMenuLink" href="../cgi-bin/hgPublicSessions">Public Sessions</a></li>
 	</ul>
 </li>
 
 <!-- OPTIONAL_VIEW_MENU -->
 
 <!-- OPTIONAL_PROJECT_MENU_START -->
 <li class="menuparent" id="projects"><span>Projects</span>
 	<ul style="display: none; visibility: hidden;">
 	<li class="first"><a href="../gtex.html">Genotype Tissue Expression (GTEx)</a></li>
 	<li><a href="../ENCODE/index.html">Encyclopedia of DNA Elements (ENCODE)</a></li>
 	<li><a href="../singlecell.html">UCSC Cell Browser</a></li>
 	<li class="last"><a href="../covid19.html">UCSC COVID-19 Research</a></li>
 	</ul>
 <!-- OPTIONAL_PROJECT_MENU_END -->
 
 <li class="menuparent" id="help"><span>Help</span><ul style="display: none; visibility: hidden;">
 <!-- CONTEXT_SPECIFIC_HELP -->
 <li><a href="../FAQ/">FAQs & Search</a></li>
 <li><a href="../goldenPath/help/hgTracksHelp.html">Browser Documentation</a></li>
 <li><a href="../training/index.html">Training</a></li>
 <li><a href="../contacts.html">Contact Us</a></li>
 <li class="last"><a href="http://genomewiki.ucsc.edu/" target="_blank">GenomeWiki</a></li>
 </ul>
 </li>
 
 <li class="menuparent last" id="aboutUs"><span>About Us</span>
 	<ul style="display: none; visibility: hidden;">
 	<li class="first odd"><a href="../goldenPath/newsarch.html">News</a></li>
 	<li class="even"><a href="../goldenPath/pubs.html">Publications</a></li>
-	<li class="even"><a href="http://genome.ucsc.edu/blog/">Blog</a></li>
-	<li class="odd"><a href="../cite.html">Cite Us</a></li>
-	<li class="even"><a href="../goldenPath/credits.html">Credits</a></li>
-	<li class="odd"><a href="../goldenPath/releaseLog.html">Release Log</a></li>
-	<li class="even"><a href="../staff.html">Staff</a></li>
+	<li class="odd"><a href="http://genome.ucsc.edu/blog/">Blog</a></li>
+	<li class="even"><a href="../cite.html">Cite Us</a></li>
+	<li class="odd"><a href="../goldenPath/credits.html">Credits</a></li>
+	<li class="even"><a href="../goldenPath/releaseLog.html">Release Log</a></li>
+	<li class="odd"><a href="../staff.html">Staff</a></li>
 	<li class="even"><a href="../conditions.html">Conditions of Use</a></li>
 	<li class="odd"><a href="https://ucscgenomics.soe.ucsc.edu/careers/" TARGET="_blank">Jobs</a></li>
 	<li class="even last"><a href="../license/">Licenses</a></li>
 </ul>
 </li>
 
 </ul>
 </div>
 		</div>
 	</div>
 	<div class="downcorner"></div>
 
 </div>
 </div><!-- end main-menu -->
 </div><!-- end main-menu-whole -->