d379fe71f9062a15c3d0fe78ff64dd62edf9816e
dschmelt
  Thu Apr 1 15:18:59 2021 -0700
dbSnpArchive track commit, with version controlled data files for 3 assemblies, outlines in detail in refs #26719

diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra
index c7524a7..6c9fc8b 100644
--- src/hg/makeDb/trackDb/human/trackDb.ra
+++ src/hg/makeDb/trackDb/human/trackDb.ra
@@ -1585,50 +1585,50 @@
 group varRep
 visibility hide
 url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$
 urlLabel dbSNP: 
 defaultGeneTracks knownGene
 maxWindowToDraw 10000000
 type bed 6 +
 trackHandler snp125
 chimpOrangMacOrthoTable snp151OrthoPt5Pa2Rm8
 chimpDb panTro5
 orangDb ponAbe2
 macaqueDb rheMac8
 hapmapPhase III
 codingAnnotations snp151CodingDbSnp,
 
-track dbSnp152
-shortLabel All dbSNP (152)
-longLabel Short Genetic Variants from dbSNP release 152
-bigDataUrl /gbdb/$D/snp/dbSnp152.bb
-detailsTabUrls _dataOffset=/gbdb/hgFixed/dbSnp/dbSnp152Details.tab.gz
-group varRep
-visibility hide
-url https://www.ncbi.nlm.nih.gov/snp/$$
-urlLabel dbSNP: 
-type bigDbSnp
-freqSourceOrder 1000Genomes,GnomAD_exomes,TOPMED,GnomAD,ExAC,GoESP,ALSPAC,TWINSUK,Estonian
-maxWindowToDraw 1000000
-classFilterValues snv,mnv,ins,del,delins,identity
-classFilterType multipleListOr
-ucscNotesFilterValues |(nothing noted),classMismatch|Variant class/type is inconsistent with allele sizes,clinvar|Present in ClinVar,clusterError|Overlaps a variant with the same type/class and position,commonAll|MAF >= 1% in all projects that report frequencies,commonSome|MAF >= 1% in at least one project that reports frequencies,delMismatch|Deleted sequence mismatches genomic reference sequence,diffMajor|Different projects report different major alleles,multiMap|Variant is placed in more than one genomic position,overlapDiffClass|Variant overlaps other variant(s) of different type/class,overlapSameClass|Variant overlaps other variant(s) of same type/class but different position,refIsMinor|Genomic reference allele is minor allele in at least one project that reports frequencies,refIsRare|Genomic reference allele frequency is <1% in at least one project,refIsSingleton|Genomic reference frequency is 0 in all projects reporting frequencies,revStrand|Variant maps to opposite strand relative to dbSNP's preferred top-level placement
-ucscNotesFilterType multipleListOr
-maxFuncImpactFilterValues 0|(not annotated),0865|frameshift,1587|stop_gained,1574|splice_acceptor_variant,1575|splice_donor_variant,1821|inframe_insertion,1583|missense_variant,1590|terminator_codon_variant,1819|synonymous_variant,1580|coding_sequence_variant,1623|5_prime_UTR_variant,1624|3_prime_UTR_variant,1619|nc_transcript_variant,2153|genic_upstream_transcript_variant,1986|upstream_transcript_variant,2152|genic_downstream_transcript_variant,1987|downstream_transcript_variant,1627|intron_variant
-maxFuncImpactFilterType multipleListOr
-priority 6.8
-release alpha
+#track dbSnp152
+#shortLabel All dbSNP (152)
+#longLabel Short Genetic Variants from dbSNP release 152
+#bigDataUrl /gbdb/$D/snp/dbSnp152.bb
+#detailsTabUrls _dataOffset=/gbdb/hgFixed/dbSnp/dbSnp152Details.tab.gz
+#group varRep
+#visibility hide
+#url https://www.ncbi.nlm.nih.gov/snp/$$
+#urlLabel dbSNP: 
+#type bigDbSnp
+#freqSourceOrder 1000Genomes,GnomAD_exomes,TOPMED,GnomAD,ExAC,GoESP,ALSPAC,TWINSUK,Estonian
+#maxWindowToDraw 1000000
+#classFilterValues snv,mnv,ins,del,delins,identity
+#classFilterType multipleListOr
+#ucscNotesFilterValues |(nothing noted),classMismatch|Variant class/type is inconsistent with allele sizes,clinvar|Present in ClinVar,clusterError|Overlaps a variant with the same type/class and position,commonAll|MAF >= 1% in all projects that report frequencies,commonSome|MAF >= 1% in at least one project that reports frequencies,delMismatch|Deleted sequence mismatches genomic reference sequence,diffMajor|Different projects report different major alleles,multiMap|Variant is placed in more than one genomic position,overlapDiffClass|Variant overlaps other variant(s) of different type/class,overlapSameClass|Variant overlaps other variant(s) of same type/class but different position,refIsMinor|Genomic reference allele is minor allele in at least one project that reports frequencies,refIsRare|Genomic reference allele frequency is <1% in at least one project,refIsSingleton|Genomic reference frequency is 0 in all projects reporting frequencies,revStrand|Variant maps to opposite strand relative to dbSNP's preferred top-level placement
+#ucscNotesFilterType multipleListOr
+#maxFuncImpactFilterValues 0|(not annotated),0865|frameshift,1587|stop_gained,1574|splice_acceptor_variant,1575|splice_donor_variant,1821|inframe_insertion,1583|missense_variant,1590|terminator_codon_variant,1819|synonymous_variant,1580|coding_sequence_variant,1623|5_prime_UTR_variant,1624|3_prime_UTR_variant,1619|nc_transcript_variant,2153|genic_upstream_transcript_variant,1986|upstream_transcript_variant,2152|genic_downstream_transcript_variant,1987|downstream_transcript_variant,1627|intron_variant
+#maxFuncImpactFilterType multipleListOr
+#priority 6.8
+#release alpha
 
 track dbSnp153Composite
 compositeTrack on
 shortLabel dbSNP 153
 longLabel Short Genetic Variants from dbSNP release 153
 type bed 3
 group varRep
 visibility pack
 url https://www.ncbi.nlm.nih.gov/snp/$$
 urlLabel dbSNP: 
 subGroup1 view Views variants=Variants errs=Mapping_Errors
 priority 0.8
 
     track dbSnp153ViewVariants
     view variants