c3bfc4b022d2fb4b343297bb880c974fe6d456de
gperez2
  Tue Mar 30 15:34:44 2021 -0700
News announcement for the updated mm39 chainNet track release, refs #26815

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     <div class="col-sm-3">
       <ul>
         <li><a href="#2005">2005 News</a></li>
         <li><a href="#2004">2004 News</a></li>
         <li><a href="#2003">2003 News</a></li>
         <li><a href="#2002">2002 News</a></li>
         <li><a href="#2001">2001 News</a></li>
       </ul>
     </div>
   </div> 
 </div>
 
 <!-- ============= 2021 archived news ============= -->
 <a name="2021"></a>
 
+<a name="033021"></a>
+<h2>Mar. 30, 2021 &nbsp;&nbsp; Updated Chain/Net tracks for Mouse (mm39/GRCm39)</h2>
+<p>We are pleased to announce the update to the <a target="_blank"
+href="../../cgi-bin/hgTrackUi?db=mm39&g=mm39ChainNet&position=default">Chain/Net</a> tracks
+for the recently released mouse assembly
+<a target="_blank" href="../../cgi-bin/hgTracks?db=mm39" >mm39/GRCm39</a>.
+The chain track shows alignments of the mouse assembly to 29 other
+organisms using a gap scoring system that allows longer gaps than traditional affine gap scoring
+systems. The net track shows the best mouse/other chain for every part of the other genome.</p><br>
+<div class="container">
+ <div class="row">
+  <div class="col-sm-4">
+  <ul>
+     <li>Bonobo <a href="../cgi-bin/hgTrackUi?db=panPan3&g=chainNetMm39&position=default"
+     target=_blank>(panPan3)</a></li>
+     <li>Bushbaby <a href="../cgi-bin/hgTrackUi?db=otoGar3&g=chainNetMm39&position=default"
+     target=_blank>(otoGar3)</a></li>
+     <li>Chicken <a href="../cgi-bin/hgTrackUi?db=galGal6&g=chainNetMm39&position=default"
+     target=_blank>(galGal6)</a></li>
+     <li>Chimp <a href="../cgi-bin/hgTrackUi?db=panTro6&g=chainNetMm39&position=default"
+     target=_blank>(panTro6)</a></li>
+     <li>Chinese pangolin <a href="../cgi-bin/hgTrackUi?db=manPen1&g=chainNetMm39&position=default"
+     target=_blank>(manPen1)</a></li>
+     <li>Cow <a href="../cgi-bin/hgTrackUi?db=bosTau9&g=chainNetMm39&position=default"
+     target=_blank>(bosTau9)</a></li>
+     <li>Dolphin <a href="../cgi-bin/hgTrackUi?db=turTru2&g=chainNetMm39&position=default"
+     target=_blank>(turTru2)</a></li>
+     <li>Elephant <a href="../cgi-bin/hgTrackUi?db=loxAfr3&g=chainNetMm39&position=default"
+     target=_blank>(loxAfr3)</a></li>
+     <li>Gorilla <a href="../cgi-bin/hgTrackUi?db=gorGor6&g=chainNetMm39&position=default"
+     target=_blank>(gorGor6)</a></li>
+     <li>Guinea pig <a href="../cgi-bin/hgTrackUi?db=cavPor3&g=chainNetMm39&position=default"
+     target=_blank>(cavPor3)</a></li>
+  </ul>
+  </div>
+  <div class="col-sm-4">
+  <ul>
+     <li>Hawaiian monk seal <a href="../cgi-bin/hgTrackUi?db=neoSch1&g=chainNetMm39&position=default"
+     target=_blank>(neoSch1)</a></li>
+     <li>Hedgehog <a href="../cgi-bin/hgTrackUi?db=eriEur2&g=chainNetMm39&position=default"
+     target=_blank>(eriEur2)</a></li>
+     <li>Horse <a href="../cgi-bin/hgTrackUi?db=equCab3&g=chainNetMm39&position=default"
+     target=_blank>(equCab3)</a></li>
+     <li>Lamprey <a href="../cgi-bin/hgTrackUi?db=petMar3&g=chainNetMm39&position=default"
+     target=_blank>(petMar3)</a></li>
+     <li>Malayan flying lemur <a href="../cgi-bin/hgTrackUi?db=galVar1&g=chainNetMm39&position=default"
+     target=_blank>(galVar1)</a></li>
+     <li>Opossum <a href="../cgi-bin/hgTrackUi?db=monDom5&g=chainNetMm39&position=default"
+     target=_blank>(monDom5)</a></li>
+     <li>Pig <a href="../cgi-bin/hgTrackUi?db=susScr3&g=chainNetMm39&position=default"
+     target=_blank>(susScr3)</a></li>
+     <li>Pika <a href="../cgi-bin/hgTrackUi?db=ochPri3&g=chainNetMm39&position=default"
+     target=_blank>(ochPri3)</a></li>
+     <li>Rabbit <a href="../cgi-bin/hgTrackUi?db=oryCun2&g=chainNetMm39&position=default"
+     target=_blank>(oryCun2)</a></li>
+     <li>Rat <a href="../cgi-bin/hgTrackUi?db=rn6&g=chainNetMm39&position=default"
+     target=_blank>(rn6)</a></li>
+  </ul>
+  </div>
+  <div class="col-sm-4">
+  <ul>
+     <li>Rhesus <a href="../cgi-bin/hgTrackUi?db=rheMac10&g=chainNetMm39&position=default"
+     target=_blank>(rheMac10)</a></li>
+     <li>Sheep <a href="../cgi-bin/hgTrackUi?db=oviAri4&g=chainNetMm39&position=default"
+     target=_blank>(oviAri4)</a></li>
+     <li>Shrew <a href="../cgi-bin/hgTrackUi?db=sorAra2&g=chainNetMm39&position=default"
+     target=_blank>(sorAra2)</a></li>
+     <li>Squirrel <a href="../cgi-bin/hgTrackUi?db=speTri2&g=chainNetMm39&position=default"
+     target=_blank>(speTri2)</a></li>
+     <li>Tarsier <a href="../cgi-bin/hgTrackUi?db=tarSyr2&g=chainNetMm39&position=default"
+     target=_blank>(tarSyr2)</a></li>
+     <li>Tenrec <a href="../cgi-bin/hgTrackUi?db=echTel2&g=chainNetMm39&position=default"
+     target=_blank>(echTel2)</a></li>
+     <li>Tree shrew <a href="../cgi-bin/hgTrackUi?db=tupBel1&g=chainNetMm39&position=default"
+     target=_blank>(tupBel1)</a></li>
+     <li>X. tropicalis <a href="../cgi-bin/hgTrackUi?db=xenTro9&g=chainNetMm39&position=default"
+     target=_blank>(xenTro9)</a></li>
+     <li>Zebrafish <a href="../cgi-bin/hgTrackUi?db=danRer11&g=chainNetMm39&position=default"
+     target=_blank>(danRer11)</a></li>
+  </ul>
+  </div>
+ </div>
+</div>
+
+<p>
+We would like to thank Angie Hinrichs, Hiram Clawson, Lou Nassar, and Gerardo Perez for the
+development and release of this track.</p>
+
 <a name="032321"></a>
 <h2>Mar. 23, 2020 &nbsp;&nbsp; New GENCODE gene tracks: Human V37 (hg19/hg38) - Mouse M26 
 (mm39)</h2>
 <p>
 We are pleased to announce new GENCODE Gene annotation tracks, which correspond
 to <a href="https://www.ensembl.info/2021/02/15/ensembl-103-has-been-released/"
 target="_blank">Ensembl 103</a>, for three assemblies: <a target="_blank" 
 href="../../cgi-bin/hgTrackUi?db=hg19&c=chr21&g=wgEncodeGencodeV37lift37">hg19/GRCh37</a>,
 <a target="_blank" href="../../cgi-bin/hgTrackUi?db=hg38&c=chr1&g=wgEncodeGencodeV37">hg38/GRCh38</a>,
 and <a target="_blank" href="../../cgi-bin/hgTrackUi?db=mm39&c=chr12&g=wgEncodeGencodeVM26">mm39/GRCm39</a>.
 For human, the GENCODE V37 annotations were mapped to hg38/GRCh38 and then back-mapped
 to the hg19/GRCh37 assembly. For all three assemblies, the gene sets contain the following
 tracks:</p>
 <ul>
   <li>Basic - a subset of the <em>Comprehensive set</em>.</li>