Commits for angie

v414_preview2 to v414_base (2021-04-26 to 2021-05-03) v414

8446663b24ef2f8db0695d970f7c6b4a03a9949f Mon Apr 26 15:33:26 2021 -0700

• Use matUtils annotate new options -m and -D to get mutations and details files.
  • src/hg/utils/otto/sarscov2phylo/updateCombinedTree.sh - lines changed 8, context: html, text, full: html, text

bd464ac7d3b30ad611826fb73c6f26ddaba52fce Thu May 17 13:12:51 2018 -0700

• Modernization: fixed compiler warnings; use 2bit instead of nib, verbose instead of uglyf. Added missing optionSpecs. This appears to be using old copied code and should use the lib function chainCalcScore instead; thanks Galt for finding that I left these changes off in a branch in 2018!
  • src/hg/mouseStuff/chainScore/chainScore.c - lines changed 30, context: html, text, full: html, text