2e3edf11e977a5c3a12aa2e1fed9cbfa25ffe928
hiram
  Mon Apr 26 15:02:21 2021 -0700
cleaning up crisprAll working data about 326 Tb no redmine

diff --git src/hg/makeDb/doc/calJac4/initialBuild.txt src/hg/makeDb/doc/calJac4/initialBuild.txt
index bc084a5..22340a3 100644
--- src/hg/makeDb/doc/calJac4/initialBuild.txt
+++ src/hg/makeDb/doc/calJac4/initialBuild.txt
@@ -1170,30 +1170,40 @@
 # hasHeaderExtension: yes
 # isCompressed: yes
 # isSwapped: 0
 # extraIndexCount: 0
 # itemCount: 287,101,022
 # primaryDataSize: 12,714,904,685
 # primaryIndexSize: 18,017,884
 # zoomLevels: 10
 # chromCount: 34
 # basesCovered: 2,272,744,456
 # meanDepth (of bases covered): 2.905440
 # minDepth: 1.000000
 # maxDepth: 29.000000
 # std of depth: 1.956870
 
+    # the command has changed since running it above, fewer arguments,
+    # running this 2021-04-23 - Hiram
+
+    time (~/kent/src/hg/utils/automation/doCrispr.pl -verbose=2 \
+    calJac4 -tableName=crisprAll \
+    -continue=cleanup -stop=cleanup -fileServer=hgwdev \
+    -buildDir=`pwd` -smallClusterHub=hgwdev -bigClusterHub=ku \
+      -workhorse=hgwdev) >> cleanup.log 2>&1
+    # real    401m40.332s
+
 #########################################################################
 # all.joiner update, downloads and in pushQ - (WORKING - 2019-11-20 - Hiram)
     cd $HOME/kent/src/hg/makeDb/schema
     # verify all the business is done for release
     ~/kent/src/hg/utils/automation/verifyBrowser.pl calJac4
 # 66 tables in database calJac4 - Dog, Canis lupus familiaris
 # verified 55 tables in database calJac4, 11 extra tables, 14 optional tables
 # chainNetRBestHg38     3 optional tables
 # chainNetRBestMm10     3 optional tables
 # chainNetSynHg38       3 optional tables
 # chainNetSynMm10       3 optional tables
 # gapOverlap    1 optional tables
 # tandemDups    1 optional tables
 # 1     chainCanFam3    - extra table
 # 2     chainCanFam3Link        - extra table