9e1d18bbaeabc8922c4aba1baa71102a436d1cc2
hiram
  Tue Apr 27 14:12:08 2021 -0700
hive cleaning running cleanup step for crispr tracks no redmine

diff --git src/hg/makeDb/doc/criGriChoV2/initialBuild.txt src/hg/makeDb/doc/criGriChoV2/initialBuild.txt
index c621334..cfb3afd 100644
--- src/hg/makeDb/doc/criGriChoV2/initialBuild.txt
+++ src/hg/makeDb/doc/criGriChoV2/initialBuild.txt
@@ -775,47 +775,52 @@
 # Average job time:                 598s       9.97m     0.17h    0.01d
 # Longest finished job:            6154s     102.57m     1.71h    0.07d
 # Submission to last job:         11237s     187.28m     3.12h    0.13d
 
 # offTargets
 Completed: 60909 of 60909 jobs
 CPU time in finished jobs:     880799s   14679.98m   244.67h   10.19d  0.028 y
 IO & Wait Time:                860327s   14338.79m   238.98h    9.96d  0.027 y
 Average job time:                  29s       0.48m     0.01h    0.00d
 Longest finished job:              48s       0.80m     0.01h    0.00d
 Submission to last job:       1104699s   18411.65m   306.86h   12.79d
 
     time (~/kent/src/hg/utils/automation/doCrispr.pl -continue=load \
 	-stop=load -buildDir=`pwd` criGriChoV2 ensGene) \
 	> load.log 2>&1
-XXX - running - Tue Feb 27 12:27:24 PST 2018
-    # real    13m52.830s
+    # real    62m59.558s
 
     featureBits -countGaps criGriChoV2 crispr10KRanges
     # 147498676 bases of 264974304 (55.665%) in intersection
 
     # XXX this does not work: Mon Jan  8 13:29:18 PST 2018
     ~/kent/src/utils/doLocusName -o criGriChoV2 ensGene
 
 sh: tabRepl: command not found
 Usage: bedOverlapMerge [options] file - merge overlapping bed features, join their names
 
 bedOverlapMerge: error: no such option: -o
 Usage: bedBetween [options] inSortedBedFile outfile (stdout ok): given sorted feats., create features between them and annotated these with the neighboring bednames. Regions around chromosomes are limited to 50kbp.
 
 bedBetween: error: no such option: -m
 
+    # cleaning hive - 2021-04-26 - Hiram
+    time (~/kent/src/hg/utils/automation/doCrispr.pl -verbose=2 \
+       -continue=cleanup criGriChoV2 -fileServer=hgwdev \
+    -buildDir=`pwd` -smallClusterHub=hgwdev -bigClusterHub=ku \
+      -workhorse=hgwdev) > cleanup.log 2>&1
+    # real    100m50.151s
 
 ##############################################################################
 
     export PATH=/hive/data/outside/crisprTrack/scripts:/hive/data/outside/crisprTrack/crispor/tools/usrLocalBin:$PATH
 
     export TMPDIR=/dev/shm
 
     # this builds everything in /hive/data/genomes/criGriChoV2/bed/crispr/
     /cluster/bin/scripts/doCrispr.sh criGriChoV2 ensGene
 
     export PATH=:/cluster/home/hiram/kent/src/utils:/hive/data/outside/crisprTrack/crispor/bin:/hive/data/outside/crisprTrack/crispor/tools/usrLocalBin:$PATH
 
     ~/kent/src/utils/doLocusName -o criGriChoV2 ensGene
 
 ##############################################################################