9e1d18bbaeabc8922c4aba1baa71102a436d1cc2
hiram
  Tue Apr 27 14:12:08 2021 -0700
hive cleaning running cleanup step for crispr tracks no redmine

diff --git src/hg/makeDb/doc/hg19.txt src/hg/makeDb/doc/hg19.txt
index 78a48fd..72cca34 100644
--- src/hg/makeDb/doc/hg19.txt
+++ src/hg/makeDb/doc/hg19.txt
@@ -32659,30 +32659,36 @@
     sort -k1,1 -k2,2n misZ.bed > misZ.bed.sorted
     bedToBigBed -tab -type=bed5 -as=pLI.as pLI.bed.sorted $chromSizes pLI.bb
     bedToBigBed -tab -type=bed5 -as=misZ.as misZ.bed.sorted $chromSizes misZ.bb
     mkdir /gbdb/hg19/gnomAD/pLI/
     ln -s `pwd`/*.bb /gbdb/hg19/gnomAD/pLI/
 
     # TODO: Ask Anne for feedback and changes, especially on color
 
 ##############################################################################
 # crispr 10K shoulders (DONE - 2018-11-09 - Hiram)
     time (~/kent/src/hg/utils/automation/doCrispr.pl \
      -stop=load -buildDir=`pwd` -smallClusterHub=hgwdev-101 hg19 ncbiRefSeq) \
 	> do.log 2>&1
     # real    5896m44.643s
 
+    # hive cleaning 2021-04-26
+    time (~/kent/src/hg/utils/automation/doCrispr.pl \
+     -continue=cleanup -buildDir=`pwd` -smallClusterHub=hgwdev hg19 \
+          -fileServer=hgwdev -smallClusterHub=hgwdev -bigClusterHub=ku
+            -workhorse=hgwdev) > cleanup.log 2>&1 &
+
 ##############################################################################
 # LASTZ human/hg19 vs. chimp/panTro6 - (DONE - 2018-12-14 - Hiram)
     mkdir /hive/data/genomes/hg19/bed/lastzPanTro6.2018-12-14
     cd /hive/data/genomes/hg19/bed/lastzPanTro6.2018-12-14
 
     printf '# human vs chimp
 BLASTZ=/cluster/bin/penn/lastz-distrib-1.04.00/bin/lastz
 # maximum M allowed with lastz is only 254
 BLASTZ_M=254
 BLASTZ_O=600
 BLASTZ_E=150
 BLASTZ_K=4500
 BLASTZ_Y=15000
 BLASTZ_L=4500
 BLASTZ_T=2