d4d57b07f6ef7aea3f07012a1f13abf642579d29 hiram Tue Apr 27 14:15:38 2021 -0700 correct name on lastz work directory refs #27321 diff --git src/hg/makeDb/doc/hg38/lastzRuns.txt src/hg/makeDb/doc/hg38/lastzRuns.txt index fa39b7c..c400232 100644 --- src/hg/makeDb/doc/hg38/lastzRuns.txt +++ src/hg/makeDb/doc/hg38/lastzRuns.txt @@ -13072,32 +13072,32 @@ sed -e 's/^/ # /;' fb.xenTro10.chainHg38Link.txt # 150875559 bases of 1448461978 (10.416%) in intersection sed -e 's/^/ # /;' fb.xenTro10.chainSynHg38Link.txt # 40317510 bases of 1448461978 (2.783%) in intersection time (doRecipBest.pl -load -workhorse=hgwdev -buildDir=`pwd` xenTro10 hg38) \ > rbest.log 2>&1 # real 344m19.222s sed -e 's/^/ # /;' fb.xenTro10.chainRBest.Hg38.txt # 71467857 bases of 1448461978 (4.934%) in intersection ############################################################################## # LASTZ Rambouillet sheep GCF_002742125.1 (DONE - 2021-04-05 - Hiram) - mkdir /hive/data/genomes/mm39/bed/lastzGCF_002742125.1.2021-04-05 - cd /hive/data/genomes/mm39/bed/lastzGCF_002742125.1.2021-04-05 + mkdir /hive/data/genomes/hg38/bed/lastzGCF_002742125.1.2021-04-05 + cd /hive/data/genomes/hg38/bed/lastzGCF_002742125.1.2021-04-05 printf '# GCF_002742125.1 vs hg38 BLASTZ=/cluster/bin/penn/lastz-distrib-1.04.03/bin/lastz BLASTZ_T=2 BLASTZ_O=400 BLASTZ_E=30 BLASTZ_M=254 # default BLASTZ_Q score matrix: # A C G T # A 91 -114 -31 -123 # C -114 100 -125 -31 # G -31 -125 100 -114 # T -123 -31 -114 91 # TARGET: Human Hg38