2e3edf11e977a5c3a12aa2e1fed9cbfa25ffe928 hiram Mon Apr 26 15:02:21 2021 -0700 cleaning up crisprAll working data about 326 Tb no redmine diff --git src/hg/makeDb/doc/regenCho1/initialBuild.txt src/hg/makeDb/doc/regenCho1/initialBuild.txt index 2976ccd..09748af 100644 --- src/hg/makeDb/doc/regenCho1/initialBuild.txt +++ src/hg/makeDb/doc/regenCho1/initialBuild.txt @@ -1017,30 +1017,37 @@ # Longest finished job: 88s 1.47m 0.02h 0.00d # Submission to last job: 48045s 800.75m 13.35h 0.56d time find tmp/outGuides -type f | xargs cut -f3-6 > ../specScores.tab # real 236m17.220s wc -l specScores.tab # 66451712 specScores.tab time (~/kent/src/hg/utils/automation/doCrispr.pl \ -continue=effScores -stop=load \ -buildDir=`pwd` -smallClusterHub=ku regenCho1 ncbiRefSeq) \ > load.log # real 307m41.143s + # cleaning 2021-04-24 - Hiram + time (~/kent/src/hg/utils/automation/doCrispr.pl -verbose=2 \ + -continue=cleanup regenCho1 -tableName=crisprAll -fileServer=hgwdev \ + -buildDir=`pwd` -smallClusterHub=hgwdev -bigClusterHub=ku \ + -workhorse=hgwdev) > cleanup.log 2>&1 + # real 354m51.815s + ######################################################################### # all.joiner update, downloads and in pushQ - (TBD - 2018-10-17 - Hiram) xyz cd $HOME/kent/src/hg/makeDb/schema # verify all the business is done for release ~/kent/src/hg/utils/automation/verifyBrowser.pl regenCho1 # fixup all.joiner until this is a clean output joinerCheck -database=regenCho1 -tableCoverage all.joiner joinerCheck -database=regenCho1 -times all.joiner joinerCheck -database=regenCho1 -keys all.joiner # when clean, check in: git commit -m 'adding rules for regenCho1 refs #24568' all.joiner git push