2e3edf11e977a5c3a12aa2e1fed9cbfa25ffe928 hiram Mon Apr 26 15:02:21 2021 -0700 cleaning up crisprAll working data about 326 Tb no redmine diff --git src/hg/makeDb/doc/rn7/initialBuild.txt src/hg/makeDb/doc/rn7/initialBuild.txt index 599f016..ef8517d 100644 --- src/hg/makeDb/doc/rn7/initialBuild.txt +++ src/hg/makeDb/doc/rn7/initialBuild.txt @@ -1242,30 +1242,37 @@ # hasHeaderExtension: yes # isCompressed: yes # isSwapped: 0 # extraIndexCount: 0 # itemCount: 274,741,534 # primaryDataSize: 12,314,717,925 # primaryIndexSize: 17,246,852 # zoomLevels: 10 # chromCount: 31 # basesCovered: 2,157,342,037 # meanDepth (of bases covered): 2.929093 # minDepth: 1.000000 # maxDepth: 33.000000 # std of depth: 1.944611 + # hive cleaning 2021-04-25 - Hiram + time (~/kent/src/hg/utils/automation/doCrispr.pl -verbose=2 \ + -continue=cleanup rn7 -tableName=crisprAll -fileServer=hgwdev \ + -buildDir=`pwd` -smallClusterHub=hgwdev -bigClusterHub=ku \ + -workhorse=hgwdev) > cleanup.log 2>&1 + # real 221m15.143s + ######################################################################### # all.joiner update, downloads and in pushQ - (DONE - 2021-03-31 - Hiram) # had incorrect orderKey specified in beginning rn6.config.ra # correct to 18019 by looking at the output of: # hgsql -e 'select name,organism,orderKey from dbDb order by orderKey;' \ # hgcentraltest | less # oryCun1 Rabbit 18010 # regenRn1 Rat 18020 # regenRn0 Rat 18021 # rn6 Rat 18031 # rn7 Rat 18032 # rn5 Rat 18032 # rn4 Rat 18033 # rn3 Rat 18034 # rn2 Rat 18035