e55f16028cef4f090371dafece16faf736596822 hiram Mon Apr 26 14:53:09 2021 -0700 fixup correct ports for blat server refs #26658 diff --git src/hg/makeDb/doc/staAur2/initialBuild.txt src/hg/makeDb/doc/staAur2/initialBuild.txt index e160777..a3d65ce 100644 --- src/hg/makeDb/doc/staAur2/initialBuild.txt +++ src/hg/makeDb/doc/staAur2/initialBuild.txt @@ -658,33 +658,33 @@ genePredCheck -db=staAur2 staAur2.ncbiGene.gp 2>&1 | sed -e 's/^/ # /;' # checked: 3060 failed: 0 hgLoadGenePred -genePredExt staAur2 ncbiGene staAur2.ncbiGene.gp genePredCheck -db=staAur2 ncbiGene 2>&1 | sed -e 's/^/ # /;' # checked: 3060 failed: 0 XXX - need to get gene descriptions out of the genbank record ######################################################################### # BLATSERVERS ENTRY (TBD - 2017-08-07 - Hiram) # After getting a blat server assigned by the Blat Server Gods, ssh hgwdev hgsql -e 'INSERT INTO blatServers (db, host, port, isTrans, canPcr) \ - VALUES ("staAur2", "blat1a", "17876", "1", "0"); \ + VALUES ("staAur2", "blat1a", "17896", "1", "0"); \ INSERT INTO blatServers (db, host, port, isTrans, canPcr) \ - VALUES ("staAur2", "blat1a", "17877", "0", "1");' \ + VALUES ("staAur2", "blat1a", "17897", "0", "1");' \ hgcentraltest # test it with some sequence ############################################################################ ## set default position to SRC gene sequence from human protein blat ## (TBD - 2017-04-19 - Hiram) ssh hgwdev hgsql -e 'update dbDb set defaultPos="NW_003613641v1:1277445-1295702" where name="staAur2";' hgcentraltest ######################################################################### # all.joiner update, downloads and in pushQ - (TBD - 2017-04-25 - Hiram) cd $HOME/kent/src/hg/makeDb/schema # fixup all.joiner until this is a clean output