2e3edf11e977a5c3a12aa2e1fed9cbfa25ffe928 hiram Mon Apr 26 15:02:21 2021 -0700 cleaning up crisprAll working data about 326 Tb no redmine diff --git src/hg/makeDb/doc/xenTro10/initialBuild.txt src/hg/makeDb/doc/xenTro10/initialBuild.txt index ed7590c..cd77aff 100644 --- src/hg/makeDb/doc/xenTro10/initialBuild.txt +++ src/hg/makeDb/doc/xenTro10/initialBuild.txt @@ -1317,30 +1317,36 @@ # hasHeaderExtension: yes # isCompressed: yes # isSwapped: 0 # extraIndexCount: 0 # itemCount: 154,656,370 # primaryDataSize: 6,243,636,535 # primaryIndexSize: 9,708,128 # zoomLevels: 10 # chromCount: 10 # basesCovered: 1,180,495,027 # meanDepth (of bases covered): 3.013224 # minDepth: 1.000000 # maxDepth: 32.000000 # std of depth: 2.066347 + time (~/kent/src/hg/utils/automation/doCrispr.pl -verbose=2 \ + -continue=cleanup xenTro10 -tableName=crisprAll -fileServer=hgwdev \ + -buildDir=`pwd` -smallClusterHub=hgwdev -bigClusterHub=ku \ + -workhorse=hgwdev) > cleanup.log 2>&1 + # real 100m50.151s + ######################################################################### # all.joiner update, downloads and in pushQ - (DONE - 2021-03-31 - Hiram) # had incorrect orderKey specified in beginning rn6.config.ra # correct to 18019 by looking at the output of: # hgsql -e 'select name,organism,orderKey from dbDb order by orderKey;' \ # hgcentraltest | less # oryCun1 Rabbit 18010 # regenRn1 Rat 18020 # regenRn0 Rat 18021 # rn6 Rat 18031 # xenTro10 Rat 18032 # rn5 Rat 18032 # rn4 Rat 18033 # rn3 Rat 18034 # rn2 Rat 18035