0f52e6e2738f1a2a84e178d24e144efdeeb81a36
hiram
  Tue Apr 27 14:14:21 2021 -0700
running cleanup step on crispr tracks no redmine

diff --git src/hg/makeDb/doc/hg38/crisprAll.txt src/hg/makeDb/doc/hg38/crisprAll.txt
index 24f3f7e..53d2169 100644
--- src/hg/makeDb/doc/hg38/crisprAll.txt
+++ src/hg/makeDb/doc/hg38/crisprAll.txt
@@ -1,42 +1,49 @@
 #########################################################################
 # crispr whole genome (WORKING - 2019-07-03 - Hiram)
     mkdir /hive/data/genomes/hg38/bed/crisprAll
     cd /hive/data/genomes/hg38/bed/crisprAll
 
     # the large shoulder argument will cause the entire genome to be scanned
     time (~/kent/src/hg/utils/automation/doCrispr.pl -verbose=2 -stop=ranges \
     hg38 knownGene -shoulder=250000000 -tableName=crisprAll -fileServer=hgwdev \
     -buildDir=`pwd` -smallClusterHub=hgwdev-101 -bigClusterHub=ku \
       -workhorse=hgwdev) > ranges.log 2>&1
     # real    3m27.509s
 
 
     time (~/kent/src/hg/utils/automation/doCrispr.pl -verbose=2 \
        -continue=guides -stop=guides \
     hg38 knownGene -shoulder=250000000 -tableName=crisprAll -fileServer=hgwdev \
     -buildDir=`pwd` -smallClusterHub=hgwdev -bigClusterHub=ku \
       -workhorse=hgwdev) > guides.log 2>&1
     # real    13m30.089s
 
     time (~/kent/src/hg/utils/automation/doCrispr.pl -verbose=2 \
        -continue=specScoreJobList -stop=specScores \
     hg38 knownGene -shoulder=250000000 -tableName=crisprAll -fileServer=hgwdev \
     -buildDir=`pwd` -smallClusterHub=hgwdev -bigClusterHub=ku \
       -workhorse=hgwdev) > specScores.log 2>&1
 # Completed: 3147278 of 3147278 jobs
 # CPU time in finished jobs:  301358514s 5022641.91m 83710.70h 3487.95d  9.556 y
 # IO & Wait Time:             153270388s 2554506.46m 42575.11h 1773.96d  4.860 y
 # Average job time:                 144s       2.41m     0.04h    0.00d
 # Longest finished job:             388s       6.47m     0.11h    0.00d
 # Submission to last job:        458446s    7640.77m   127.35h    5.31d
 
     ### remember to get back to hgwdev to run this
     time (~/kent/src/hg/utils/automation/doCrispr.pl -verbose=2 \
        -continue=effScores -stop=load \
     hg38 knownGene -shoulder=250000000 -tableName=crisprAll -fileServer=hgwdev \
     -buildDir=`pwd` -smallClusterHub=hgwdev -bigClusterHub=ku \
       -workhorse=hgwdev) > load.log 2>&1
     # real    1085m38.773s
 
+    # cleaning up 2021-04-24 - Hiram
+    time (~/kent/src/hg/utils/automation/doCrispr.pl -verbose=2 \
+       -continue=cleanup \
+    hg38 -tableName=crisprAll -fileServer=hgwdev \
+    -buildDir=`pwd` -smallClusterHub=hgwdev -bigClusterHub=ku \
+      -workhorse=hgwdev) > cleanup.log 2>&1
+
 #########################################################################