098e7866ab59c5c6b0c4c77919350d637894d113
markd
  Wed Apr 28 00:38:42 2021 -0700
transMap V6

diff --git src/hg/makeDb/trackDb/trackDb.transMap.ra src/hg/makeDb/trackDb/trackDb.transMap.ra
index c79dc36..b8d62bb 100644
--- src/hg/makeDb/trackDb/trackDb.transMap.ra
+++ src/hg/makeDb/trackDb/trackDb.transMap.ra
@@ -1,15 +1,18 @@
+#############################################################################
+# V4
+#############################################################################
 track transMap
 superTrack on
 shortLabel TransMap
 longLabel TransMap Alignments
 group genes
 
 track transMapV4
 superTrack on
 shortLabel TransMap V4
 longLabel TransMap Alignments Version 4
 html transMap
 group genes
 
     track transMapEnsemblV4
     superTrack transMapV4 pack
@@ -116,30 +119,34 @@
     baseColorDefault none
     baseColorUseSequence lfExtra
     indelDoubleInsert on
     indelQueryInsert on
     showDiffBasesAllScales .
     showDiffBasesMaxZoom 10000.0
     labelFields commonName,orgAbbrev,srcDb,srcTransId,name
     defaultLabelFields orgAbbrev,srcTransId
     labelSeparator " "
     bigDataUrl /gbdb/$D/transMap/V4/$D.est.transMapV4.bigPsl
     searchIndex name,srcTransId
 
 searchTable transMapEstV4
 searchType bigPsl
 
+#############################################################################
+# V5
+#############################################################################
+
 track transMapV5
 superTrack on
 shortLabel TransMap V5
 longLabel TransMap Alignments Version 5
 html transMapV5
 group genes
 
     track transMapEnsemblV5
     superTrack transMapV5 pack
     shortLabel TransMap Ensembl
     longLabel TransMap Ensembl and GENCODE Mappings Version 5
     html transMapEnsembl
     transMapSrcSet ensembl
     group genes
     type bigPsl
@@ -239,15 +246,143 @@
     visibility hide
     baseColorDefault none
     baseColorUseSequence lfExtra
     indelDoubleInsert on
     indelQueryInsert on
     showDiffBasesAllScales .
     showDiffBasesMaxZoom 10000.0
     labelFields commonName,orgAbbrev,srcDb,srcTransId,name
     defaultLabelFields orgAbbrev,srcTransId
     labelSeparator " "
     bigDataUrl /gbdb/$D/transMap/V5/$D.est.transMapV5.bigPsl
     searchIndex name,srcTransId
 
 searchTable transMapEstV5
 searchType bigPsl
+
+#############################################################################
+# V6
+#############################################################################
+
+track transMapV6
+superTrack on
+shortLabel TransMap V6
+longLabel TransMap Alignments Version 5
+html transMapV6
+group genes
+
+    track transMapEnsemblV6
+    superTrack transMapV6 pack
+    shortLabel TransMap Ensembl
+    longLabel TransMap Ensembl and GENCODE Mappings Version 5
+    html transMapEnsembl
+    transMapSrcSet ensembl
+    group genes
+    type bigPsl
+    priority 10.001
+    color 0,100,0
+    canPack on
+    visibility pack
+    baseColorDefault diffCodons
+    baseColorUseCds given
+    baseColorUseSequence lfExtra
+    indelDoubleInsert on
+    indelQueryInsert on
+    showDiffBasesAllScales .
+    showDiffBasesMaxZoom 10000.0
+    showCdsAllScales .
+    showCdsMaxZoom 10000.0
+    labelFields commonName,orgAbbrev,srcDb,srcTransId,name,geneName,geneId,geneType,transcriptType
+    defaultLabelFields orgAbbrev,geneName
+    labelSeparator " "
+    bigDataUrl /gbdb/$D/transMap/V6/$D.ensembl.transMapV6.bigPsl
+    searchIndex name,srcTransId,geneName,geneId
+
+searchTable transMapEnsemblV6
+searchType bigPsl
+
+    track transMapRefSeqV6
+    superTrack transMapV6 pack
+    shortLabel TransMap RefGene
+    longLabel TransMap RefSeq Gene Mappings Version 5
+    html transMapRefSeq
+    transMapSrcSet refseq
+    group genes
+    type bigPsl
+    priority 10.003
+    color 0,100,0
+    canPack on
+    visibility pack
+    baseColorDefault diffCodons
+    baseColorUseCds given
+    baseColorUseSequence lfExtra
+    indelDoubleInsert on
+    indelQueryInsert on
+    showDiffBasesAllScales .
+    showDiffBasesMaxZoom 10000.0
+    showCdsAllScales .
+    showCdsMaxZoom 10000.0
+    labelFields commonName,orgAbbrev,srcDb,srcTransId,name,geneName,geneId
+    defaultLabelFields orgAbbrev,geneName
+    labelSeparator " "
+    bigDataUrl /gbdb/$D/transMap/V6/$D.refseq.transMapV6.bigPsl
+    searchIndex name,srcTransId,geneName,geneId
+
+searchTable transMapRefSeqV6
+searchType bigPsl
+
+    track transMapRnaV6
+    superTrack transMapV6 hide
+    shortLabel TransMap RNA
+    longLabel TransMap GenBank RNA Mappings Version 5
+    html transMapRna
+    transMapSrcSet rna
+    group genes
+    type bigPsl
+    priority 10.004
+    color 0,100,0
+    canPack on
+    visibility hide
+    baseColorDefault diffCodons
+    baseColorUseCds given
+    baseColorUseSequence lfExtra
+    indelDoubleInsert on
+    indelQueryInsert on
+    showDiffBasesAllScales .
+    showDiffBasesMaxZoom 10000.0
+    showCdsAllScales .
+    showCdsMaxZoom 10000.0
+    labelFields commonName,orgAbbrev,srcDb,srcTransId,name,geneName
+    defaultLabelFields orgAbbrev,srcTransId
+    labelSeparator " "
+    bigDataUrl /gbdb/$D/transMap/V6/$D.rna.transMapV6.bigPsl
+    searchIndex name,srcTransId,geneName
+
+searchTable transMapRnaV6
+searchType bigPsl
+
+    track transMapEstV6
+    superTrack transMapV6 hide
+    shortLabel TransMap ESTs
+    longLabel TransMap EST Mappings Version 5
+    html transMapEst
+    transMapSrcSet est
+    group genes
+    type bigPsl
+    priority 10.005
+    color 0,100,0
+    canPack on
+    visibility hide
+    baseColorDefault none
+    baseColorUseSequence lfExtra
+    indelDoubleInsert on
+    indelQueryInsert on
+    showDiffBasesAllScales .
+    showDiffBasesMaxZoom 10000.0
+    labelFields commonName,orgAbbrev,srcDb,srcTransId,name
+    defaultLabelFields orgAbbrev,srcTransId
+    labelSeparator " "
+    bigDataUrl /gbdb/$D/transMap/V6/$D.est.transMapV6.bigPsl
+    searchIndex name,srcTransId
+
+searchTable transMapEstV6
+searchType bigPsl