045df4f1b6993a988ad9076cf9880d61aadf0a8f
max
  Wed Apr 28 02:51:37 2021 -0700
makedoc fix for revel, #27142

diff --git src/hg/makeDb/doc/hg19.txt src/hg/makeDb/doc/hg19.txt
index 78a48fd..f854c76 100644
--- src/hg/makeDb/doc/hg19.txt
+++ src/hg/makeDb/doc/hg19.txt
@@ -34504,21 +34504,21 @@
     comm -23 <(sort -k1 -k2n wgRna2021-02-18.bed) <(sort -k1 -k2n wgRna.backup) | cut -f9 | sort -u
 miRNA
 
     # rename wgRnaNew table:
     hgsqlSwapTables -dropTable3 hg19 wgRnaNew wgRna wgRnaOld
 
 ##############################################################################
 # Add Revel track, Max, Thu Apr 15 03:33:49 PDT 2021
 cd /hive/data/genomes/hg19/bed/revel
 aria2c https://rothsj06.u.hpc.mssm.edu/revel_grch38_all_chromosomes.csv.zip
 unzip revel_grch38_all_chromosomes.csv.zip
 # make sure that no weird chroms and no weird multi-nucleotide changes
 cat revel_grch38_all_chromosomes.csv  | tr ',' '\t' | cut -f5 | grep -v alt | awk '{print length($1)}' | uniq > lens.tmp &
 cut -d, revel_grch38_all_chromosomes.csv -f1 | uniq | sort | uniq -c > chroms.tmp &
 pigz revel_grch38_all_chromosomes.csv
-time python revelToWig.py hg19
-wigToBigWig t.wig ../chrom.sizes t.bw &
-wigToBigWig c.wig ../chrom.sizes c.bw  &
-wigToBigWig a.wig ../chrom.sizes a.bw &
-wigToBigWig g.wig ../chrom.sizes g.bw &
+time python revelToWig.py revel_grch38_all_chromosomes.csv.gz hg19
+wigToBigWig t.wig ../../chrom.sizes t.bw &
+wigToBigWig c.wig ../../chrom.sizes c.bw  &
+wigToBigWig a.wig ../../chrom.sizes a.bw &
+wigToBigWig g.wig ../../chrom.sizes g.bw &
 ##############################################################################