Commits for angie

v413_base to v414_preview (2021-04-12 to 2021-04-19) v414

327d2ed5c8b98712241ead111cb880b19c87666b Tue Apr 13 17:50:41 2021 -0700

• Add spike mutation category (VoC, escape, RBD, cleavage, spike, D614G) to spike mutation summary TSV output.
  • src/hg/hgPhyloPlace/phyloPlace.c - lines changed 72, context: html, text, full: html, text

5da4f2f879717a10fbc2996adbfbc15c9e344667 Tue Apr 13 18:23:59 2021 -0700

• Set parBase in sncList for TSV output for imputed bases too (oops).
  • src/hg/hgPhyloPlace/phyloPlace.c - lines changed 6, context: html, text, full: html, text

0225987c360191851dd02bc7fd9d02a704da4654 Tue Apr 13 18:25:15 2021 -0700

• For spike mutations of same priority, order by position.
  • src/hg/hgPhyloPlace/phyloPlace.c - lines changed 4, context: html, text, full: html, text

655174351c1c50009ea8e8af21ad0b15d8231e55 Tue Apr 13 23:15:03 2021 -0700

• gzip-compress the public tree download files. Leave around an uncompressed copy of public-*.masked.pb in case somebody's script depends on it.
  • src/hg/utils/otto/sarscov2phylo/updatePublicTree.sh - lines changed 19, context: html, text, full: html, text

b46cc2178f40ac4831d5896d96523677c04f36d9 Tue Apr 13 23:15:41 2021 -0700

• More accurate sample count for combined tree.
  • src/hg/utils/otto/sarscov2phylo/updateCombinedTree.sh - lines changed 2, context: html, text, full: html, text