7b8c4af57e40b08fecfb49756e7995c88ad43abc brianlee Wed Apr 14 14:06:31 2021 -0700 adding some publications no RM diff --git src/hg/htdocs/goldenPath/pubs.html src/hg/htdocs/goldenPath/pubs.html index 57c5a63..4a032ae 100755 --- src/hg/htdocs/goldenPath/pubs.html +++ src/hg/htdocs/goldenPath/pubs.html @@ -14,30 +14,39 @@ <a href="https://scholar.google.com/citations?view_op=search_authors&hl=en&mauthors=UCSC+Genome+Browser" target="_blank"> <img class="gbsInlineImg" src="../images/googleScholar.png"></a></h6> <h2>2021</h2> <p> Gonzalez JN, Zweig AS, Speir ML, Schmelter D, Rosenbloom KR, Raney BJ, Powell CC, Nassar LR, Maulding ND, Lee CM, Lee BT, Hinrichs AS, Fyfe AC, Fernandes JD, Diekhans M, Clawson H, Casper J, Benet-Pagés A, Barber GP, Haussler D, Kuhn RM, Haeussler M, Kent WJ <a href="https://academic.oup.com/nar/article/49/D1/D1046/5998393" target="_blank"> The UCSC Genome Browser database: 2021 update</a> <em>Nucleic Acids Res</em>. 2021 Jan 8;49(D1):D1046-D1057. PMID: <a href="https://pubmed.ncbi.nlm.nih.gov/33221922/" target="_blank">33221922</a> PMCID: <a href="http://www.ncbi.nlm.nih.gov/pmc/articles/pmc7779060/" target="_blank">PMC7779060</a> </p> +<p> +Moreno P, Huang N, Manning JR, Mohammed S, Solovyev A, Polanski K, Bacon W, Chazarra R, +Talavera-López C, Doyle MA <em>et al</em>. +<a href="https://www.ncbi.nlm.nih.gov/pubmed/33782609" target="_blank"> +User-friendly, scalable tools and workflows for single-cell RNA-seq analysis</a>. +<em>Nat Methods</em>. 2021 Apr;18(4):327-328. +PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/33782609" target="_blank">33782609</a> +</p> + <h2>2020</h2> <p> Birgmeier J, Deisseroth CA, Hayward LE, Galhardo LMT, Tierno AP, Jagadeesh KA, Stenson PD, Cooper DN, Bernstein JA, Haeussler M <em>et al</em>. <a href="http://dx.doi.org/10.1038/s41436-019-0643-6" target="_blank"> AVADA: toward automated pathogenic variant evidence retrieval directly from the full-text literature</a>. <em>Genet Med</em>. 2020 Feb;22(2):362-370. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/31467448" target="_blank">31467448</a> </p> <p> Fernandes JD, Hinrichs AS, Clawson H, Gonzalez JN, Lee BT, Nassar LR, Raney BJ, Rosenbloom KR, Nerli S, Rao AA, Schmelter D, Fyfe A, Maulding N, @@ -47,48 +56,67 @@ 2020 Sep 9;. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/32908258" target="_blank">32908258</a> </p> <p> Fernandes JD, Zamudio-Hurtado A, Clawson H, Kent WJ, Haussler D, Salama SR, Haeussler M. <a href="https://www.ncbi.nlm.nih.gov/pubmed/32266012" target="_blank"> The UCSC repeat browser allows discovery and visualization of evolutionary conflict across repeat families</a>. <em>Mob DNA</em>. 2020;11:13. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/32266012" target="_blank">32266012</a>; PMC: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7110667/" target="_blank">PMC7110667</a> </p> <p> +Ferraro NM, Strober BJ, Einson J, Abell NS, Aguet F, Barbeira AN, Brandt M, Bucan M, Castel SE, +Davis JR <em>et al</em>. +<a href="https://www.ncbi.nlm.nih.gov/pubmed/32913073" target="_blank"> +Transcriptomic signatures across human tissues identify functional rare genetic variation</a>. +<em>Science</em>. 2020 Sep 11;369(6509). +PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/32913073" target="_blank">32913073</a>; PMC: <a +href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7646251/" target="_blank">PMC7646251</a> +</p> + +<p> GTEx Consortium.. <a href="https://www.ncbi.nlm.nih.gov/pubmed/32913098" target="_blank"> The GTEx Consortium atlas of genetic regulatory effects across human tissues</a>. <em>Science</em>. 2020 Sep 11;369(6509):1318-1330. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/32913098" target="_blank">32913098</a>; PMC: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7737656/" target="_blank">PMC7737656</a> </p> <p> Haeussler M. <a href="https://doi.org/10.1007/s10565-019-09497-1" target="_blank"> CRISPR off-targets: a question of context</a>. <em>Cell Biol Toxicol</em>. 2020 Feb;36(1):5-9. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/31734746" target="_blank">31734746</a>; PMC: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7056574/" target="_blank">PMC7056574</a> </p> <p> +Kim-Hellmuth S, Aguet F, Oliva M, Muñoz-Aguirre M, Kasela S, Wucher V, Castel SE, Hamel AR, +Viñuela A, Roberts AL <em>et al</em>. +<a href="https://www.ncbi.nlm.nih.gov/pubmed/32913075" target="_blank"> +Cell type-specific genetic regulation of gene expression across human tissues</a>. +<em>Science</em>. 2020 Sep 11;369(6509). +PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/32913075" target="_blank">32913075</a> +</p> + +<p> Lee CM, Barber GP, Casper J, Clawson H, Diekhans M, Gonzalez JN, Hinrichs AS, Lee BT, Nassar LR, Powell CC, Raney BJ, Rosenbloom KR, Schmelter D, Speir ML, Zweig AS, Haussler D, Haeussler M, Kuhn RM, Kent WJ. <a href="https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkz1012" target="_blank"> UCSC Genome Browser enters 20th year</a>. <em>Nucleic Acids Res</em>. 2020 Jan 8;48(D1):D756-D761. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/31691824" target="_blank">31691824</a> </p> <p> Turakhia Y, De Maio N, Thornlow B, Gozashti L, Lanfear R, Walker CR, Hinrichs AS, Fernandes JD, Borges R, Slodkowicz G <em>et al</em>. <a href="https://www.ncbi.nlm.nih.gov/pubmed/33206635" target="_blank"> Stability of SARS-CoV-2 phylogenies</a>. <em>PLoS Genet</em>. 2020 Nov;16(11):e1009175.