4ab728db880ed6e6215651248fc82787f7cbf675 brianlee Mon Apr 12 10:06:41 2021 -0700 Adding a link to the new ZLab Public Hubs on the ENCODE3 Tracks (cCREs/TFBS) after email conversation with Max no RM diff --git src/hg/makeDb/trackDb/human/encRegTfbsClustered.html src/hg/makeDb/trackDb/human/encRegTfbsClustered.html index baf7156..f3343da 100644 --- src/hg/makeDb/trackDb/human/encRegTfbsClustered.html +++ src/hg/makeDb/trackDb/human/encRegTfbsClustered.html @@ -64,32 +64,36 @@ Data Integrator. This data is stored internally as a BED5+3 MySQL table with additional metadata tables. For automated analysis and download, the encRegTfbsClusteredWithCells.hg38.bed.gz track data file can be downloaded from our downloads server, which has 5 fields of BED data followed by a comma-separated list of cell types. The data can also be queried using the JSON API or the Public SQL server.

Credits

Thanks to the ENCODE Consortium, the ENCODE ChIP-seq production laboratories, and the ENCODE Data Coordination Center for generating and processing the TF ChIP-seq datasets used here. The ENCODE accession numbers of the constituent datasets are available from the peak details page. Special thanks to Henry Pratt, Jill Moore, Michael Purcaro, and Zhiping Weng, PI, at the -ENCODE Data Analysis Center (ZLab at UMass Medical Center) for providing the peak datasets, metadata, and guidance -developing this track.

+ENCODE Data Analysis Center +(ZLab at UMass Medical Center) for providing the peak datasets, metadata, +and guidance developing this track. Please check the +ZLab ENCODE Public Hubs +for the most updated data. +

The integrative view presented here was developed by Jim Kent at UCSC.

References

ENCODE Project Consortium. A user's guide to the encyclopedia of DNA elements (ENCODE). PLoS Biol. 2011 Apr;9(4):e1001046. PMID: 21526222; PMCID: PMC3079585

ENCODE Project Consortium. An integrated encyclopedia of DNA elements in the human genome. Nature. 2012 Sep 6;489(7414):57-74. PMID: 22955616; PMCID: PMC3439153