cc0f7e07de3a3ecadcb0b41ea2359b76cb63bf08 hiram Mon Apr 19 09:58:25 2021 -0700 up to date listings for VGP assemblies refs #23891 diff --git src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt index 2bf061f..fc2eb19 100644 --- src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt +++ src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt @@ -1,38 +1,40 @@ 30522 GCA_003369685.2_UOA_Angus_1 mammals 59729 GCA_003957525.1_bTaeGut1_v1.h birds -9244 GCA_003957575.1_bCalAnn1_v1.h birds 9244 GCA_003957555.2_bCalAnn1_v1.p birds +59729 GCA_003957565.2_bTaeGut1_v1.p birds +9244 GCA_003957575.1_bCalAnn1_v1.h birds 2489341 GCA_004011185.1_bStrHab1_v1.h birds +2489341 GCA_004027225.2_bStrHab1.2.pri birds 9258 GCA_004115175.2_mOrnAna1.alt.v3 mammals 9258 GCA_004115215.3_mOrnAna1.pri.v3 mammals 89673 GCA_004115245.1_mPhyDis1_v1.h mammals -59479 GCA_004115295.1_mRhiFer1_v1.h mammals 59479 GCA_004115265.2_mRhiFer1_v1.p mammals +59479 GCA_004115295.1_mRhiFer1_v1.h mammals 63155 GCA_007364235.1_fArcCen1_v1.h fish +63155 GCA_007364275.2_fArcCen1 fish 1825980 GCA_007399395.1_rGopEvg1_v1.alt reptiles 61383 GCA_007474575.1_mLynCan4_v1.alt mammals 28689 GCA_008658355.1_bAlcTor1_alternate birds 28689 GCA_008658365.1_bAlcTor1_primary birds 9771 GCA_008658375.1_mBalMus1_alternate mammals 42100 GCA_008692045.1_mPhoSin1.alt mammals 59729 GCA_008822115.3_bTaeGut2.mat.v3 birds 59729 GCA_008822125.1_bTaeGut2pat birds 1196302 GCA_009651025.1_bCorMon1.alt birds 9704 GCA_009762295.1_mZalCal1.alt mammals 9704 GCA_009762305.1_mZalCal1.pri mammals -9704 GCF_009762305.2_mZalCal1.pri.v2 mammals 1203425 GCA_009762535.1_fNotCel1.pri fish 1203425 GCA_009762545.1_fNotCel1.alt fish 27794 GCA_009762595.1_rDerCor1.alt reptiles 685728 GCA_009764475.1_sPriPec2.pri sharks 685728 GCA_009764485.1_sPriPec2.alt sharks 121530 GCA_009764505.1_bTauEry1.alt birds 135433 GCA_009764545.1_bGeoTri1.alt birds 27794 GCA_009764565.1_rDerCor1.pri reptiles 135433 GCA_009764595.1_bGeoTri1.pri birds 121530 GCA_009769465.1_bTauEry1.pri birds 8869 GCA_009769485.1_bCygOlo1.alt birds 240206 GCA_009769505.1_bPteGut1.alt birds 8103 GCA_009769515.1_fCycLum1.alt fish 240206 GCA_009769525.1_bPteGut1.pri birds 8103 GCA_009769545.1_fCycLum1.pri fish @@ -50,129 +52,159 @@ 48155 GCA_009819655.1_bSylAtr1.pri birds 8267 GCA_009819705.1_fHipHip1.pri fish 48155 GCA_009819715.1_bSylAtr1.alt birds 8267 GCA_009819745.1_fHipHip1.alt fish 9218 GCA_009819775.1_bPhoRub2.pri birds 9218 GCA_009819805.1_bPhoRub2.alt birds 54380 GCA_009819825.1_bCarCri1.pri birds 219594 GCA_009819845.1_bAytFul2.alt birds 409849 GCA_009829125.1_fPerMag1.pri fish 409849 GCA_009829135.1_fPerMag1.alt fish 36723 GCA_009829165.1_mMusErm1.alt mammals 296741 GCA_009829205.1_bChiLan1.alt birds 59729 GCA_009859025.1_bTaeGut2.p.v1.alt birds 59729 GCA_009859065.2_bTaeGut2.pri.v2 birds 9771 GCA_009873245.2_mBalMus1.v2 mammals -386614 GCA_010909765.1_sAmbRad1.pri sharks 386614 GCA_010909745.1_sAmbRad1.alt sharks +386614 GCA_010909765.1_sAmbRad1.pri sharks 7757 GCA_010993595.1_kPetMar1.alt otherChordates 8010 GCA_011004835.1_fEsoLuc1.alt fish 8010 GCA_011004845.1_fEsoLuc1.pri fish -8010 GCF_011004845.1_fEsoLuc1.pri fish 100784 GCA_011004865.1_bBalReg1.alt birds 100784 GCA_011004875.1_bBalReg1.pri birds 9483 GCA_011078405.1_mCalJac1.mat primates 9483 GCA_011100535.1_mCalJac1.pat primates 9483 GCA_011100555.1_mCalJac1.pat.X primates 9337 GCA_011100635.1_mTriVul1.pri mammals 9337 GCA_011100645.1_mTriVul1.alt mammals 61156 GCA_011750645.1_mArvNil1.mat mammals 61156 GCA_011762505.1_mArvNil1.pat.X mammals 9739 GCA_011762515.1_mTurTru1.pat mammals 9739 GCA_011762535.1_mTurTru1.mat mammals 61156 GCA_011762545.1_mArvNil1.pat mammals 9739 GCA_011762595.1_mTurTru1.mat.Y mammals -9739 GCF_011762595.1_mTurTru1.mat.Y mammals 13146 GCA_012275265.1_bMelUnd1.mat birds 13146 GCA_012275275.1_bMelUnd1.pat birds 13146 GCA_012275295.1_bMelUnd1.mat.Z birds -13146 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