b3d942abf8f844c5972e6a6af3da4f75e4e1c5ce jnavarr5 Thu Apr 15 15:23:47 2021 -0700 Replacing 'download' with 'mirror'. 'download' is not a valid command for GBiC, refs #27070 diff --git src/product/installer/browserSetup.sh src/product/installer/browserSetup.sh index e3c8362..0dcb552 100755 --- src/product/installer/browserSetup.sh +++ src/product/installer/browserSetup.sh @@ -1413,31 +1413,31 @@ # This also allows apache to write into the trash dir chown -R $APACHEUSER:$APACHEUSER $CGIBINDIR $HTDOCDIR $TRASHDIR touch $COMPLETEFLAG echo2 Install complete. You should now be able to point your web browser to this machine echo2 and test your UCSC Genome Browser mirror. It will be too slow for practical use. echo2 echo2 Notice that this mirror is still configured to use Mysql and data files loaded echo2 through the internet from UCSC. From most locations on the world, this is very slow. echo2 It also requires an open outgoing TCP port 3306 for Mysql to genome-mysql.soe.ucsc.edu/genome-euro-mysql.soe.ucsc.edu, echo2 and open TCP port 80 to hgdownload.soe.ucsc.edu/hgdownload-euro.soe.ucsc.edu. echo2 echo2 To finish the installation, you need to download genome data to the local echo2 disk. To download a genome assembly and all its files now, call this script again with - echo2 the parameters 'download "<assemblyName1> <assemblyName2> ..."', e.g. '"'bash $0 download mm10 hg19'"' + echo2 the parameters 'download "<assemblyName1> <assemblyName2> ..."', e.g. '"'bash $0 mirror mm10 hg19'"' echo2 showMyAddress } # GENOME DOWNLOAD: mysql and /gbdb function downloadGenomes { DBS=$* GENBANKTBLS="" if [ "$DBS" == "" ] ; then echo2 Argument error: the '"download"' command requires at least one assembly name, like hg19 or mm10. exit 1 fi echo2