6433773a86994d104ca22309fefea208573c29d4
max
  Fri Apr 16 08:42:26 2021 -0700
fixing terrible trackDb typo that lead to cadd being dropped on the RR at some point, no ticket, automatic email from trackDb checker

diff --git src/hg/makeDb/doc/hg19.txt src/hg/makeDb/doc/hg19.txt
index 86a0199..78a48fd 100644
--- src/hg/makeDb/doc/hg19.txt
+++ src/hg/makeDb/doc/hg19.txt
@@ -34496,15 +34496,29 @@
 | CDBox   |  269 |
 | HAcaBox |  112 |
 | miRNA   | 1918 |
 | scaRna  |   21 |
 +---------+------+
 
     # backup old table and compare to new one before rename. Should be only miRNA update:
     hgsql -Ne "select * from wgRna" hg19 | cut -f2- > wgRna.backup
     comm -23 <(sort -k1 -k2n wgRna2021-02-18.bed) <(sort -k1 -k2n wgRna.backup) | cut -f9 | sort -u
 miRNA
 
     # rename wgRnaNew table:
     hgsqlSwapTables -dropTable3 hg19 wgRnaNew wgRna wgRnaOld
 
 ##############################################################################
+# Add Revel track, Max, Thu Apr 15 03:33:49 PDT 2021
+cd /hive/data/genomes/hg19/bed/revel
+aria2c https://rothsj06.u.hpc.mssm.edu/revel_grch38_all_chromosomes.csv.zip
+unzip revel_grch38_all_chromosomes.csv.zip
+# make sure that no weird chroms and no weird multi-nucleotide changes
+cat revel_grch38_all_chromosomes.csv  | tr ',' '\t' | cut -f5 | grep -v alt | awk '{print length($1)}' | uniq > lens.tmp &
+cut -d, revel_grch38_all_chromosomes.csv -f1 | uniq | sort | uniq -c > chroms.tmp &
+pigz revel_grch38_all_chromosomes.csv
+time python revelToWig.py hg19
+wigToBigWig t.wig ../chrom.sizes t.bw &
+wigToBigWig c.wig ../chrom.sizes c.bw  &
+wigToBigWig a.wig ../chrom.sizes a.bw &
+wigToBigWig g.wig ../chrom.sizes g.bw &
+##############################################################################