9f489fd23ec7d2d33eaf1984d1ba3c0887b75fd4
dschmelt
  Tue Apr 20 15:13:53 2021 -0700
Adding maxWindowSize and related lines to cadd, removing caddAlpha for refs #27079

diff --git src/hg/makeDb/trackDb/human/caddAlpha.ra src/hg/makeDb/trackDb/human/caddAlpha.ra
deleted file mode 100644
index eb8e624..0000000
--- src/hg/makeDb/trackDb/human/caddAlpha.ra
+++ /dev/null
@@ -1,93 +0,0 @@
-track caddSuper
-shortLabel CADD
-longLabel CADD 1.6 Score for all single-basepair mutations and selected insertions/deletions
-superTrack on hide
-type bed
-visibility hide
-group phenDis
-color 100,130,160
-
-track cadd
-shortLabel CADD
-longLabel CADD 1.6 Score for all possible single-basepair mutations (zoom in to show exact score on mouse over, same basepair = score 0.0)
-type bigWig
-compositeTrack on
-parent caddSuper
-visibility dense
-#maxWindowToQuery 500000
-group phenDis
-color 100,130,160
-html caddSuper
-maxWindowToDraw 10000000
-
-        track caddA
-        shortLabel Mutation: A
-        longLabel CADD 1.6 Score: Mutation is A
-        type bigWig
-        parent cadd on
-        visibility dense
-        bigDataUrl /gbdb/$D/cadd/a.bw
-        maxHeightPixels 128:20:8
-        viewLimits 0:30
-        viewLimitsMax 0:100
-
-        track caddC
-        shortLabel Mutation: C
-        longLabel CADD 1.6 Score: Mutation is C
-        type bigWig
-        parent cadd on
-        visibility dense
-        bigDataUrl /gbdb/$D/cadd/c.bw
-        maxHeightPixels 128:20:8
-        viewLimits 0:30
-        viewLimitsMax 0:100
-
-        track caddG
-        shortLabel Mutation: G
-        longLabel CADD 1.6 Score: Mutation is G
-        type bigWig
-        parent cadd on
-        visibility dense
-        bigDataUrl /gbdb/$D/cadd/g.bw
-        maxHeightPixels 128:20:8
-        viewLimits 0:30
-        viewLimitsMax 0:100
-
-        track caddT
-        shortLabel Mutation: T
-        longLabel CADD 1.6 Score: Mutation is T
-        type bigWig
-        parent cadd on
-        visibility dense
-        bigDataUrl /gbdb/$D/cadd/t.bw
-        maxHeightPixels 128:20:8
-        viewLimits 0:30
-        viewLimitsMax 0:100
-
-track caddIns
-shortLabel Insertions
-longLabel CADD 1.6 Score: Insertions - label is length of insertion
-type bigBed 9 +
-parent caddSuper
-visibility dense
-bigDataUrl /gbdb/$D/cadd/ins.bb
-mouseOver Mutation: $change CADD Phred score: $phred
-html caddSuper
-maxWindowCoverage 40000
-maxItems 1000000
-maxWindowToDraw 9000000
-scoreFilterLimits 0:100
-
-track caddDel
-shortLabel Deletions
-longLabel CADD 1.6 Score: Deletions - label is length of deletion
-type bigBed 9 +
-parent caddSuper
-visibility dense
-bigDataUrl /gbdb/$D/cadd/del.bb
-mouseOver Mutation: $change CADD Phred score: $phred
-html caddSuper
-maxWindowCoverage 40000
-maxItems 1000000
-maxWindowToDraw 9000000
-scoreFilterLimits 0:100