77ceb7f28c14b899e105395b479a29de88c1e419 galt Mon Apr 19 17:47:52 2021 -0700 typographical error hg19 analysisSet diff --git src/hg/makeDb/doc/hg19.analysisSet.txt src/hg/makeDb/doc/hg19.analysisSet.txt index aae6fe8..77e8c1b 100644 --- src/hg/makeDb/doc/hg19.analysisSet.txt +++ src/hg/makeDb/doc/hg19.analysisSet.txt @@ -38,16 +38,16 @@ mkdir hg19 zcat hg19.p13.plusMT.no_alt_analysis_set.fa.gz > hg19/hg19.p13.plusMT.no_alt_analysis_set.fa cd hg19 bwa index hg19.p13.plusMT.no_alt_analysis_set.fa bowtie2-build hg19.p13.plusMT.no_alt_analysis_set.fa hg19.p13.plusMT.no_alt_analysis_set hisat2-build hg19.p13.plusMT.no_alt_analysis_set.fa hg19.p13.plusMT.no_alt_analysis_set cd .. tar cvzf hg19.p13.plusMT.no_alt_analysis_set.bwa_index.tar.gz hg19/*.{pac,amb,ann,bwt,sa} tar cvzf hg19.p13.plusMT.no_alt_analysis_set.bowtie2_index.tar.gz hg19/*.bt2 tar cvzf hg19.p13.plusMT.no_alt_analysis_set.hisat2_index.tar.gz hg19/*.ht2 # copy stuff to webserver mkdir /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/bigZips/analysisSet/chromAlias -p mv *.2bit hg19.*.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/bigZips/analysisSet/ -mv *toUcsc.txt /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/bigZips/analysisSet/chromAlias/ +mv *ToUcsc.txt /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/bigZips/analysisSet/chromAlias/