fcc6591a9eb3db4aeb92d2a6d45e43b689e99896
galt
  Wed Apr 21 23:55:56 2021 -0700
adding mm10 to altScaffoldPlacementToBed.pl so it does not create IDs with sub-version, like hg19.

diff --git src/hg/utils/automation/altScaffoldPlacementToBed.pl src/hg/utils/automation/altScaffoldPlacementToBed.pl
index e542415..136809f 100755
--- src/hg/utils/automation/altScaffoldPlacementToBed.pl
+++ src/hg/utils/automation/altScaffoldPlacementToBed.pl
@@ -36,38 +36,38 @@
 while (<>) {
   next if (/^#/);
   chomp;
   my @w = split("\t");
   my ($altScafName, $altAcc, $c, $cAcc, $altStart, $altEnd, $cStart, $cEnd, $altEndTail) =
        ($w[2], $w[3], $w[5], $w[6], $w[9], $w[10], $w[11], $w[12], $w[14]);
   my $suffix = $aNameToSuffix{$altScafName};
   if (! $suffix) {
     $suffix = ($altScafName =~ m/PATCH$/) ? "fix" : "alt";
   }
   my $chr = "chr$c";
   my $chrBase = $chr;
   if ($c =~ m/^HSCHR/) {
     # Mapping is not alt/fix to chrom, but fix to alt; convert alt accession to UCSC format:
     $chr = $cAcc;
-    if ($opt_db && $opt_db eq 'hg19') {
+    if ($opt_db && ($opt_db eq 'hg19' || $opt_db eq 'mm10')) {
       $chr =~ s/^(\w+)\.\d+/$1/ || die "Unexpected cAcc ($cAcc)";
       $chr = lc($chr);
     } else {
       $chr =~ s/^(\w+)\.(\d+)/$1v$2/ || die "Unexpected cAcc ($cAcc)";
     }
     $chrBase =~ s/HSCHR([A-Z0-9]+)_.*/$1/;
     $chr = "${chrBase}_${chr}_alt";
   }
-  if ($opt_db && $opt_db eq 'hg19') {
+  if ($opt_db && ($opt_db eq 'hg19' || $opt_db eq 'mm10')) {
     $altAcc =~ s/^(\w+)\.\d+/$1/ || die "Unexpected altAcc ($altAcc)";
     $altAcc = lc($altAcc);
   } else {
     $altAcc =~ s/^(\w+)\.(\d+)/$1v$2/ || die "Unexpected altAcc ($altAcc)";
   }
   $altAcc = "${chrBase}_${altAcc}_$suffix";
   my $altName = $altAcc;
   if ($altStart > 1 || $altEndTail > 0) {
     $altName .= ":$altStart-$altEnd";
   }
   print join("\t", $chr, $cStart-1, $cEnd, $altName) . "\n";
   print join("\t", $altAcc, $altStart-1, $altEnd, $chr.":$cStart-$cEnd") . "\n";
 }