02336754147822f5aa61ba13277123b2cc629001 markd Thu May 20 08:38:55 2021 -0700 Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies. diff --git src/hg/pslSwap/tests/input/trans.psl src/hg/pslSwap/tests/input/trans.psl deleted file mode 100644 index 94ca216..0000000 --- src/hg/pslSwap/tests/input/trans.psl +++ /dev/null @@ -1,12 +0,0 @@ -652 257 0 0 0 0 2 16618 ++ NM_001000613 936 0 909 chr1 245522847 42314 59841 3 162,701,46, 0,162,863, 42314,52973,59795, -749 166 0 0 0 0 0 0 ++ NM_146400 966 15 930 chr1 245522847 52799 53714 1 915, 15, 52799, -771 167 0 0 0 0 0 0 ++ NM_001000369 939 1 939 chr1 245522847 52812 53750 1 938, 1, 52812, -500 154 0 0 2 504 5 6805 +- NM_001020776 1480 132 1290 chr1 245522847 92653606 92661065 6 57,84,30,135,164,184, 132,339,777,807,942,1106, 152861782,152862321,152864639,152864784,152866513,152869057, -760 155 0 0 0 0 0 0 +- NM_001000579 939 0 915 chr1 245522847 660982 661897 1 915, 0, 244860950, -760 155 0 0 0 0 0 0 +- NM_001000608 939 0 915 chr1 245522847 660982 661897 1 915, 0, 244860950, -375 67 0 0 3 201 4 1810 +- AK004209 954 0 643 chr1 245522847 4558 6810 6 87,50,109,72,17,107, 0,274,325,434,506,536, 245516037,245517030,245517080,245517946,245518158,245518182, -1053 181 0 0 3 200 10 8963 +- AK033616 1764 80 1514 chr1 245522847 4558 14755 12 155,112,147,141,69,60,195,50,109,72,17,107, 80,235,347,494,635,704,764,1145,1196,1305,1377,1407, 245508092,245514605,245514923,245515242,245515620,245515692,245515929,245517030,245517080,245517946,245518158,245518182, -1057 183 0 0 3 200 10 8963 +- AJ304796 1808 29 1469 chr1 245522847 4558 14761 12 161,112,147,141,69,60,195,49,110,72,17,107, 29,190,302,449,590,659,719,1100,1150,1260,1332,1362, 245508086,245514605,245514923,245515242,245515620,245515692,245515929,245517030,245517079,245517946,245518158,245518182, -41 10 0 0 0 0 0 0 -+ AA542579 418 367 418 chr1 245522847 2866 2917 1 51, 0, 2866, -401 62 0 0 1 44 4 6780 -+ AA388728 507 0 507 chr1 245522847 7488 14731 5 117,147,69,40,90, 0,117,264,377,417, 7488,7777,8130,14600,14641, -344 55 0 0 1 31 3 6768 -+ AA866967 449 15 445 chr1 245522847 7576 14743 4 29,147,79,144, 4,33,180,290, 7576,7777,8130,14599,