02336754147822f5aa61ba13277123b2cc629001 markd Thu May 20 08:38:55 2021 -0700 Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies. diff --git src/utils/pslMap/tests/expected/retroParent.psl src/utils/pslMap/tests/expected/retroParent.psl new file mode 100644 index 0000000..08c4ddc --- /dev/null +++ src/utils/pslMap/tests/expected/retroParent.psl @@ -0,0 +1,4 @@ +1027 0 0 0 0 0 0 0 - chr6 170899992 32518204 32519681 chr6 170899992 33144387 33145639 23 11,18,12,136,12,13,12,38,29,8,27,26,29,302,9,9,21,16,11,20,5,10,253, 138380311,138380322,138380341,138380353,138380491,138380504,138380517,138380538,138380580,138380614,138380639,138380679,138380729,138380759,138381069,138381093,138381110,138381146,138381162,138381193,138381519,138381525,138381535, 33144387,33144399,33144417,33144430,33144566,33144578,33144592,33144604,33144642,33144671,33144679,33144706,33144732,33144761,33145063,33145072,33145081,33145102,33145121,33145132,33145370,33145375,33145386, +1166 0 0 0 0 0 0 0 - chr6 170899992 32820912 32822219 chr6 170899992 33144337 33149226 36 17,24,10,10,161,10,22,11,12,12,10,27,21,299,16,15,19,10,4,7,18,20,15,12,15,13,6,34,19,11,12,23,217,7,26,1, 138077773,138077792,138077818,138077828,138077842,138078003,138078014,138078036,138078047,138078059,138078071,138078093,138078128,138078150,138078452,138078487,138078502,138078521,138078531,138078535,138078542,138078580,138078601,138078616,138078637,138078666,138078693,138078713,138078760,138078779,138078790,138078802,138078826,138079044,138079053,138079079, 33144337,33144354,33144379,33144393,33144403,33144567,33144577,33144603,33144618,33144661,33144679,33144710,33144737,33144758,33145057,33145088,33145106,33145129,33145141,33145150,33145159,33145177,33145197,33145213,33145225,33145240,33145253,33145259,33145297,33145319,33145348,33145368,33145391,33145608,33145615,33149225, +986 0 0 0 0 0 0 0 + chr6 170899992 33082821 33084021 chr6 170899992 33144409 33149230 22 29,138,14,9,21,11,8,316,4,6,9,22,28,46,17,17,31,106,9,119,21,5, 33082821,33082850,33082988,33083002,33083011,33083032,33083045,33083053,33083372,33083380,33083398,33083410,33083441,33083629,33083678,33083707,33083724,33083755,33083864,33083873,33083995,33084016, 33144409,33144439,33144647,33144670,33144701,33144738,33144749,33144761,33145077,33145081,33145087,33145096,33145118,33145267,33145313,33145330,33145348,33145383,33145489,33145501,33145620,33149225, +4952 0 0 0 0 0 0 0 + chr6 170899992 33140771 33149335 chr6 170899992 33140771 33149335 19 127,618,4,62,59,2,1398,22,50,4,195,3,270,2,358,407,2,1259,110, 33140771,33140901,33141519,33141524,33141587,33141649,33141651,33143050,33143077,33143127,33143132,33143335,33143338,33143610,33143612,33143971,33144380,33144382,33149225, 33140771,33140901,33141520,33141524,33141587,33141646,33141651,33143050,33143077,33143128,33143132,33143327,33143338,33143608,33143612,33143971,33144379,33144382,33149225,