02336754147822f5aa61ba13277123b2cc629001 markd Thu May 20 08:38:55 2021 -0700 Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies. diff --git src/utils/pslMap/tests/input/mm6ToHg17.chain src/utils/pslMap/tests/input/mm6ToHg17.chain new file mode 100644 index 0000000..e553be5 --- /dev/null +++ src/utils/pslMap/tests/input/mm6ToHg17.chain @@ -0,0 +1,237 @@ +chain 66553 chr11 134452384 + 2141628 2149610 chr7 139739827 + 137305700 137313000 149 +41 12 0 +29 0 3 +6 5 0 +7 0 2 +58 4 0 +13 1 0 +19 51 0 +14 6 0 +12 1 0 +11 12 0 +22 0 6 +22 0 4 +18 0 5 +33 0 12 +176 0 7 +16 0 5 +16 0 45 +40 4 0 +8 7 0 +30 11 0 +22 16 0 +15 3 0 +7 20 0 +22 0 1 +10 8 0 +74 31 0 +15 14 0 +56 7 0 +29 0 25 +25 2 0 +25 8 0 +22 6 0 +59 0 4 +31 0 5 +9 0 19 +21 0 1 +9 0 25 +22 2 0 +7 0 1 +28 18 0 +16 4 0 +23 0 1 +176 12 0 +7 18 0 +5 4 0 +26 0 1 +11 4 0 +13 9 0 +52 2 0 +13 3 0 +61 0 2 +19 0 1 +10 3 0 +118 1 0 +14 0 1 +16 5 0 +7 6 0 +10 5 0 +9 6 0 +12 26 0 +8 22 0 +11 4 0 +13 2 0 +28 10 0 +71 0 3 +36 0 1 +28 6 0 +21 0 4 +24 7 0 +4 0 4 +19 227 205 +12 7 0 +103 0 8 +31 0 25 +15 0 40 +12 0 2 +168 2 0 +3 20 0 +15 12 0 +33 14 0 +163 0 1 +7 0 22 +13 1 0 +7 0 8 +7 0 3 +22 18 0 +14 6 0 +13 33 0 +13 1 0 +13 0 3 +15 1 0 +5 11 0 +12 30 0 +11 0 1 +37 0 3 +76 0 4 +12 0 14 +87 0 10 +4 0 5 +17 5 0 +12 1 0 +16 5 0 +8 2 0 +6 2 0 +28 0 2 +8 30 0 +18 1 0 +11 2 0 +14 0 1 +26 1 0 +9 0 5 +12 6 0 +8 0 1 +7 0 2 +29 18 0 +37 2 0 +91 3 0 +18 116 77 +112 0 2 +96 42 0 +4 10 0 +33 9 0 +27 0 9 +29 3 0 +6 14 0 +14 0 1 +234 0 6 +24 0 29 +18 0 21 +4 1 0 +26 66 70 +50 0 1 +28 4 0 +18 28 0 +16 2 0 +34 0 7 +20 4 0 +16 0 41 +43 17 0 +35 5 0 +35 8 0 +8 12 0 +16 0 2 +14 1 0 +5 0 2 +16 32 0 +7 19 0 +6 18 0 +7 37 0 +28 21 0 +20 3 0 +17 0 2 +8 19 0 +8 0 1 +43 7 0 +21 3 0 +16 0 2 +8 0 2 +160 0 3 +74 1 0 +36 18 0 +23 2 0 +8 6 0 +4 30 0 +12 0 1 +11 0 9 +23 4 0 +5 11 0 +20 1 0 +13 0 2 +19 5 0 +14 17 0 +25 0 1 +30 4 0 +11 0 14 +24 0 20 +3 0 11 +13 0 10 +12 0 1 +4 2 0 +23 3 0 +27 0 2 +11 0 1 +18 0 10 +19 0 8 +4 4 0 +25 6 0 +22 0 3 +9 0 13 +5 3 0 +16 0 6 +21 0 1 +9 7 0 +7 0 3 +8 8 0 +8 1 0 +69 29 0 +13 4 0 +17 3 0 +22 1 0 +24 2 0 +17 0 2 +64 28 0 +6 0 4 +47 1 0 +5 1 0 +10 4 0 +31 15 0 +45 0 16 +9 0 2 +29 0 1 +7 0 1 +29 25 0 +33 1 0 +21 0 10 +39 78 81 +23 5 0 +35 5 0 +11 0 5 +7 9 0 +11 2 0 +29 2 0 +14 0 6 +27 0 5 +15 0 2 +14 14 0 +20 0 2 +6 1 0 +20 7 0 +31 1 0 +56 3 0 +6 13 0 +16 10 0 +111 0 1 +2 +