02336754147822f5aa61ba13277123b2cc629001 markd Thu May 20 08:38:55 2021 -0700 Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies. diff --git src/utils/pslMap/tests/input/negQ.chain src/utils/pslMap/tests/input/negQ.chain new file mode 100644 index 0000000..96b5ff1 --- /dev/null +++ src/utils/pslMap/tests/input/negQ.chain @@ -0,0 +1,632 @@ +chain 0 chr3 199501827 + 47430198 47492453 chr9 124000669 - 13770557 13822147 31 +1 6 0 +18 3 0 +32 4 0 +15 1 0 +20 2 0 +17 1 0 +20 0 12 +277 0 2 +12 0 5 +21 2 0 +18 3 0 +222 0 1 +18 3 0 +7 0 2 +27 2 0 +4 13 0 +8 13 0 +17 36 0 +10 1 0 +108 6 0 +29 0 2 +14 1 0 +20 0 1 +57 1 0 +11 1 0 +8 1 0 +190 1 0 +12 0 1 +26 5 0 +20 0 1 +124 85 0 +11 0 3 +31 0 1 +21 9 0 +29 0 1 +16 0 1 +19 2 0 +28 0 3 +41 2 195 +53 6 0 +12 0 2 +24 13 0 +19 4 0 +21 0 1 +56 1 0 +22 1 0 +8 0 1 +60 12 0 +11 4 0 +8 7 0 +6 7 0 +18 8 0 +37 4 0 +7 2 0 +17 0 2 +33 9 0 +30 17 0 +25 0 1 +69 3 0 +25 3 0 +17 3 0 +32 0 3 +19 2 0 +32 0 5 +20 0 18 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