02336754147822f5aa61ba13277123b2cc629001 markd Thu May 20 08:38:55 2021 -0700 Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies. diff --git src/hg/utils/pslRc/pslRc.c src/hg/utils/pslRc/pslRc.c deleted file mode 100644 index bfd8ca7..0000000 --- src/hg/utils/pslRc/pslRc.c +++ /dev/null @@ -1,55 +0,0 @@ -/* pslRc - reverse-complement psl */ - -#include "common.h" -#include "linefile.h" -#include "dnautil.h" -#include "options.h" -#include "psl.h" - -/* command line options */ -static struct optionSpec optionSpecs[] = { - {NULL, 0} -}; -boolean gNoRc = FALSE; - -void usage() -/* usage message and abort */ -{ -errAbort("pslRc - reverse-complement psl\n" - "usage:\n" - " pslRc [options] inPsl outPsl\n" - "\n" - "reverse-complement psl\n" - "\n" - "Options:\n"); -} - -void pslRcFile(char *inPslFile, char *outPslFile) -/* reverse target and query in a psl file */ -{ -struct lineFile *inLf = pslFileOpen(inPslFile); -FILE *outFh = mustOpen(outPslFile, "w"); -struct psl *psl; - -while ((psl = pslNext(inLf)) != NULL) - { - pslRc(psl); - pslTabOut(psl, outFh); - pslFree(&psl); - } - -carefulClose(&outFh); -lineFileClose(&inLf); -} - -int main(int argc, char** argv) -/* entry */ -{ -optionInit(&argc, argv, optionSpecs); -if (argc != 3) - usage("wrong # args"); -gNoRc = optionExists("noRc"); -dnaUtilOpen(); -pslRcFile(argv[1], argv[2]); -return 0; -}