02336754147822f5aa61ba13277123b2cc629001 markd Thu May 20 08:38:55 2021 -0700 Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies. diff --git src/utils/pslMap/tests/expected/kgProt.psl src/utils/pslMap/tests/expected/kgProt.psl new file mode 100644 index 0000000..1cf7c98 --- /dev/null +++ src/utils/pslMap/tests/expected/kgProt.psl @@ -0,0 +1,5 @@ +1263 0 0 0 0 0 1 1141 - Q99983 1263 0 1263 chr9 136372045 90518845 90521249 2 323,940, 0,323, 90518845,90520309, +1239 0 0 0 0 0 7 12535 + Q99984 1239 0 1239 chr1 246127941 78516310 78530084 8 361,49,196,153,172,101,175,32, 0,361,410,606,759,931,1032,1207, 78516310,78517228,78517997,78523614,78525309,78529298,78529712,78530052, +2253 0 0 0 0 0 16 169632 - Q99985 2253 0 2253 chr7 158545518 79986263 80158148 17 411,131,68,158,42,89,223,145,70,115,143,120,91,120,63,161,103, 0,411,542,610,768,810,899,1122,1267,1337,1452,1595,1715,1806,1926,1989,2150, 79986263,79990264,79992635,79999697,80002982,80006521,80030672,80039458,80042123,80044031,80045472,80047005,80051977,80059665,80068791,80069951,80158045, +2931 0 0 0 0 0 9 377952 - O14490 2931 0 2931 chr18 76115139 3489185 3870068 10 207,153,92,422,92,374,241,178,215,957, 0,207,360,452,874,966,1340,1581,1759,1974, 3489185,3492490,3498567,3524191,3557487,3571872,3719134,3732334,3804058,3869111, +1188 0 0 0 0 0 11 46546 + Q99986 1188 0 1188 chr14 105311216 95289849 95337583 12 160,56,70,88,109,93,128,126,59,179,91,29, 0,160,216,286,374,483,576,704,830,889,1068,1159, 95289849,95294139,95302472,95303634,95309208,95309451,95311601,95312502,95312905,95316934,95332407,95337554,