02336754147822f5aa61ba13277123b2cc629001
markd
  Thu May 20 08:38:55 2021 -0700
Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.

diff --git src/utils/pslMap/tests/expected/mrnaMrnaMap.psl src/utils/pslMap/tests/expected/mrnaMrnaMap.psl
new file mode 100644
index 0000000..3847311
--- /dev/null
+++ src/utils/pslMap/tests/expected/mrnaMrnaMap.psl
@@ -0,0 +1,7 @@
+2255	0	0	0	1	1	2	7768	-	AB000114	2263	7	2263	chr9	136372045	90517946	90527969	4	225,997,956,77,	0,226,1223,2179,	90517946,90518171,90520309,90527892,
+4670	0	0	0	0	0	16	56313	+	AK000004	4670	0	4670	chr9	136372045	91078940	91139923	17	156,502,90,137,157,139,59,147,93,80,31,108,63,123,516,1374,895,	0,156,658,748,885,1042,1181,1240,1387,1480,1560,1591,1699,1762,1885,2401,3775,	91078940,91079898,91106615,91107691,91109714,91113936,91114904,91117542,91119427,91121826,91123521,91124007,91126017,91133564,91136459,91136998,91139028,
+4952	0	0	0	0	0	16	56781	+	AY211386	4952	0	4952	chr9	136372045	91078190	91139923	17	247,168,502,90,137,157,139,59,147,93,80,31,108,63,123,1913,895,	0,247,415,917,1007,1144,1301,1440,1499,1646,1739,1819,1850,1958,2021,2144,4057,	91078190,91078928,91079898,91106615,91107691,91109714,91113936,91114904,91117542,91119427,91121826,91123521,91124007,91126017,91133564,91136459,91139028,
+3044	0	0	0	1	4	17	58457	+	BC032429	3224	118	3166	chr9	136372045	91078420	91139921	18	8,168,502,90,137,157,139,59,147,93,80,31,108,63,123,105,141,893,	118,130,298,800,890,1027,1184,1323,1382,1529,1622,1702,1733,1841,1904,2027,2132,2273,	91078420,91078928,91079898,91106615,91107691,91109714,91113936,91114904,91117542,91119427,91121826,91123521,91124007,91126017,91133564,91136459,91138231,91139028,
+1650	0	0	0	1	1	2	7768	-	BC046356	1890	177	1828	chr9	136372045	90518551	90527969	4	617,944,12,77,	62,679,1624,1636,	90518551,90520309,90521253,90527892,
+3285	0	0	0	0	0	17	58448	+	BX647829	3319	19	3304	chr9	136372045	91078190	91139923	18	247,168,502,90,137,157,139,59,147,93,80,31,108,63,123,105,141,895,	19,266,434,936,1026,1163,1320,1459,1518,1665,1758,1838,1869,1977,2040,2163,2268,2409,	91078190,91078928,91079898,91106615,91107691,91109714,91113936,91114904,91117542,91119427,91121826,91123521,91124007,91126017,91133564,91136459,91138231,91139028,
+1313	0	0	0	3	6	7	12583	+	AX810690	1348	7	1326	chr9	136372045	91126025	91139921	10	6,30,19,123,52,52,141,241,102,547,	7,14,45,64,187,239,291,432,673,779,	91126025,91126031,91126061,91133564,91136459,91136512,91138231,91139028,91139270,91139374,