02336754147822f5aa61ba13277123b2cc629001
markd
  Thu May 20 08:38:55 2021 -0700
Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.

diff --git src/utils/pslMap/tests/expected/mrnaMrnaXMap.psl src/utils/pslMap/tests/expected/mrnaMrnaXMap.psl
new file mode 100644
index 0000000..27cc08d
--- /dev/null
+++ src/utils/pslMap/tests/expected/mrnaMrnaXMap.psl
@@ -0,0 +1,17 @@
+2255	0	0	0	1	1	2	7768	-	AB000114	2263	7	2263	chr9	136372045	90517946	90527969	4	225,997,956,77,	0,226,1223,2179,	90517946,90518171,90520309,90527892,
+4670	0	0	0	0	0	16	56313	+	AK000004	4670	0	4670	chr9	136372045	91078940	91139923	17	156,502,90,137,157,139,59,147,93,80,31,108,63,123,516,1374,895,	0,156,658,748,885,1042,1181,1240,1387,1480,1560,1591,1699,1762,1885,2401,3775,	91078940,91079898,91106615,91107691,91109714,91113936,91114904,91117542,91119427,91121826,91123521,91124007,91126017,91133564,91136459,91136998,91139028,
+113	0	0	0	2	84	2	91	+	AK000004	4670	2417	2614	chr9	136372045	91136968	91137172	4	24,40,25,24,	2417,2514,2554,2590,	91136968,91136992,91137080,91137148,
+87	0	0	0	0	0	2	85	+	AK000004	4670	2394	2481	chr9	136372045	91137014	91137186	3	33,20,34,	2394,2427,2447,	91137014,91137120,91137152,
+94	0	0	0	1	37	1	126	+	AK000004	4670	2517	2648	chr9	136372045	91136972	91137192	3	27,25,42,	2517,2581,2606,	91136972,91136999,91137150,
+51	0	0	0	0	0	1	37	+	AK000004	4670	2398	2449	chr9	136372045	91137114	91137202	2	26,25,	2398,2424,	91137114,91137177,
+4952	0	0	0	0	0	16	56781	+	AY211386	4952	0	4952	chr9	136372045	91078190	91139923	17	247,168,502,90,137,157,139,59,147,93,80,31,108,63,123,1913,895,	0,247,415,917,1007,1144,1301,1440,1499,1646,1739,1819,1850,1958,2021,2144,4057,	91078190,91078928,91079898,91106615,91107691,91109714,91113936,91114904,91117542,91119427,91121826,91123521,91124007,91126017,91133564,91136459,91139028,
+110	0	0	0	0	0	2	85	+	AY211386	4952	2653	2763	chr9	136372045	91136991	91137186	3	56,20,34,	2653,2709,2729,	91136991,91137120,91137152,
+151	0	0	0	3	69	2	53	+	AY211386	4952	2676	2896	chr9	136372045	91136968	91137172	5	69,3,26,29,24,	2676,2745,2768,2832,2872,	91136968,91137047,91137050,91137076,91137148,
+78	0	0	0	0	0	2	110	+	AY211386	4952	2653	2731	chr9	136372045	91137014	91137202	3	33,20,25,	2653,2686,2706,	91137014,91137120,91137177,
+94	0	0	0	1	37	1	126	+	AY211386	4952	2799	2930	chr9	136372045	91136972	91137192	3	27,25,42,	2799,2863,2888,	91136972,91136999,91137150,
+90	0	0	0	2	79	1	4	+	AY211386	4952	2699	2868	chr9	136372045	91136968	91137062	3	31,44,15,	2699,2803,2853,	91136968,91136999,91137047,
+54	0	0	0	0	0	1	37	+	AY211386	4952	2657	2711	chr9	136372045	91137114	91137205	2	26,28,	2657,2683,	91137114,91137177,
+3035	0	0	0	0	0	16	57957	+	BC032429	3224	130	3165	chr9	136372045	91078928	91139920	17	168,502,90,137,157,139,59,147,93,80,31,108,63,123,105,141,892,	130,298,800,890,1027,1184,1323,1382,1529,1622,1702,1733,1841,1904,2027,2132,2273,	91078928,91079898,91106615,91107691,91109714,91113936,91114904,91117542,91119427,91121826,91123521,91124007,91126017,91133564,91136459,91138231,91139028,
+1647	0	0	0	1	1	2	7768	-	BC046356	1890	177	1825	chr9	136372045	90518554	90527969	4	614,954,2,77,	65,679,1634,1636,	90518554,90520309,90521263,90527892,
+3285	0	0	0	0	0	17	58448	+	BX647829	3319	19	3304	chr9	136372045	91078190	91139923	18	247,168,502,90,137,157,139,59,147,93,80,31,108,63,123,105,141,895,	19,266,434,936,1026,1163,1320,1459,1518,1665,1758,1838,1869,1977,2040,2163,2268,2409,	91078190,91078928,91079898,91106615,91107691,91109714,91113936,91114904,91117542,91119427,91121826,91123521,91124007,91126017,91133564,91136459,91138231,91139028,
+1310	0	0	0	2	3	6	12581	+	AX810690	1348	14	1327	chr9	136372045	91126031	91139922	9	30,19,123,52,52,141,241,103,549,	14,45,64,187,239,291,432,673,778,	91126031,91126061,91133564,91136459,91136512,91138231,91139028,91139270,91139373,