02336754147822f5aa61ba13277123b2cc629001 markd Thu May 20 08:38:55 2021 -0700 Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies. diff --git src/utils/pslMap/tests/expected/retroParent.mapinfo src/utils/pslMap/tests/expected/retroParent.mapinfo new file mode 100644 index 0000000..27fd22c --- /dev/null +++ src/utils/pslMap/tests/expected/retroParent.mapinfo @@ -0,0 +1,5 @@ +#srcQName srcQStart srcQEnd srcQSize srcTName srcTStart srcTEnd srcStrand srcAligned mappingQName mappingQStart mappingQEnd mappingTName mappingTStart mappingTEnd mappingStrand mappingId mappedQName mappedQStart mappedQEnd mappedTName mappedTStart mappedTEnd mappedStrand mappedAligned qStartTrunc qEndTrunc +chr6 32518204 32519681 170899992 AB209058.1-1 114 1366 + 1027 AB209058-1 0 5008 chr6 33140769 33149337 - 0 chr6 32518204 32519681 chr6 33144387 33145639 - 1027 0 0 +chr6 32820912 32822219 170899992 AB209058.1-3 111 1417 + 1168 AB209058-1 0 5008 chr6 33140769 33149337 - 0 chr6 32820912 32822219 chr6 33144337 33149226 - 1166 0 0 +chr6 33082821 33084021 170899992 AB209058.1-5 107 1344 - 986 AB209058-1 0 5008 chr6 33140769 33149337 - 0 chr6 33082821 33084021 chr6 33144409 33149230 + 986 0 0 +chr6 33140771 33149335 170899992 AB209058.1-6 2 5006 - 4976 AB209058-1 0 5008 chr6 33140769 33149337 - 0 chr6 33140771 33149335 chr6 33140771 33149335 + 4952 0 0