02336754147822f5aa61ba13277123b2cc629001 markd Thu May 20 08:38:55 2021 -0700 Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies. diff --git src/utils/pslMap/tests/input/kgProtMRna.blast src/utils/pslMap/tests/input/kgProtMRna.blast new file mode 100644 index 0000000..846138f --- /dev/null +++ src/utils/pslMap/tests/input/kgProtMRna.blast @@ -0,0 +1,2239 @@ +TBLASTN 2.2.6 [Apr-09-2003] + + +Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, +Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), +"Gapped BLAST and PSI-BLAST: a new generation of protein database search +programs", Nucleic Acids Res. 25:3389-3402. + +Query= Q99983 + (421 letters) + +Database: /cluster/bluearc/markd/snpProtein/kgMrna.fa + 37,452 sequences; 89,350,383 total letters + +Searching..................................................done + + Score E +Sequences producing significant alignments: (bits) Value + +AB000114 773 0.0 +AF205403 236 6e-62 +BC032498 224 2e-58 +BT006707 212 9e-55 +BC007038 212 9e-55 +X75546 193 4e-49 +AY029191 110 4e-24 +BC028292 100 6e-21 +AY313607 100 8e-21 +NM_133503 95 2e-19 + +>AB000114 + Length = 2263 + + Score = 773 bits (1995), Expect = 0.0 + Identities = 378/421 (89%), Positives = 378/421 (89%) + Frame = +2 + +Query: 1 MGFLSPIYVIFFFFGVKVHCQYETYQWXXXXXXXXXXXXXTGFPFRQNVDYGVPFHQYTL 60 + MGFLSPIYVIFFFFGVKVHCQYETYQW TGFPFRQNVDYGVPFHQYTL +Sbjct: 101 MGFLSPIYVIFFFFGVKVHCQYETYQWDEDYDQEPDDDYQTGFPFRQNVDYGVPFHQYTL 280 + +Query: 61 GCVSECFCPTNFPSSMYCDNRKLKTIPNIPMHIQQLYLQFNEIEAVTANSFINATHLKEI 120 + GCVSECFCPTNFPSSMYCDNRKLKTIPNIPMHIQQLYLQFNEIEAVTANSFINATHLKEI +Sbjct: 281 GCVSECFCPTNFPSSMYCDNRKLKTIPNIPMHIQQLYLQFNEIEAVTANSFINATHLKEI 460 + +Query: 121 NLSHNKIKSQKIDYGVFAKXXXXXXXXXXXXXXXXFPFPLPKSLERLLLGYNEISKLQTN 180 + NLSHNKIKSQKIDYGVFAK FPFPLPKSLERLLLGYNEISKLQTN +Sbjct: 461 NLSHNKIKSQKIDYGVFAKLPNLLQLHLEHNNLEEFPFPLPKSLERLLLGYNEISKLQTN 640 + +Query: 181 AMDGLVNLTMLDLCYNYLHDSLLKDKIFAKMEKLMQLNLCSNRLESMPPGLPSSLMYLSL 240 + AMDGLVNLTMLDLCYNYLHDSLLKDKIFAKMEKLMQLNLCSNRLESMPPGLPSSLMYLSL +Sbjct: 641 AMDGLVNLTMLDLCYNYLHDSLLKDKIFAKMEKLMQLNLCSNRLESMPPGLPSSLMYLSL 820 + +Query: 241 ENNSISSIPEKYFDKLPKLHTLRMSHNKLQDIPYNIFNLPNIVELSVGHNKLKQAFYIPR 300 + ENNSISSIPEKYFDKLPKLHTLRMSHNKLQDIPYNIFNLPNIVELSVGHNKLKQAFYIPR +Sbjct: 821 ENNSISSIPEKYFDKLPKLHTLRMSHNKLQDIPYNIFNLPNIVELSVGHNKLKQAFYIPR 1000 + +Query: 301 NLEHLYLQNNEIEKMNLTVMCPSIDPLHYHHLTYIRVDQNKLKEPISSYIFFCFPHIHTI 360 + NLEHLYLQNNEIEKMNLTVMCPSIDPLHYHHLTYIRVDQNKLKEPISSYIFFCFPHIHTI +Sbjct: 1001NLEHLYLQNNEIEKMNLTVMCPSIDPLHYHHLTYIRVDQNKLKEPISSYIFFCFPHIHTI 1180 + +Query: 361 YYGEQRSTNGQTIQLKTQVFRRFXXXXXXXXXXXXXXNAHESPEQEGAEGHFDLHYYENQ 420 + YYGEQRSTNGQTIQLKTQVFRRF NAHESPEQEGAEGHFDLHYYENQ +Sbjct: 1181YYGEQRSTNGQTIQLKTQVFRRFPDDDDESEDHDDPDNAHESPEQEGAEGHFDLHYYENQ 1360 + +Query: 421 E 421 + E +Sbjct: 1361E 1363 + + +>AF205403 + Length = 2159 + + Score = 236 bits (602), Expect = 6e-62 + Identities = 125/303 (41%), Positives = 183/303 (60%), Gaps = 10/303 (3%) + Frame = +3 + +Query: 62 CVSECFCPTNFPSSMYCDNRKLKTIPNIPMHIQQLYLQFNEIEAVTANSFINATHLKEIN 121 + C ECFCP +FP+++YC+NR LK IP IP I LYLQ N IE + F NAT L+ IN +Sbjct: 372 CPMECFCPPSFPTALYCENRGLKEIPAIPSRIWYLYLQNNLIETIPEKPFENATQLRWIN 551 + +Query: 122 LSHNKIKSQKIDYGVFAKXXXXXXXXXXXXXXXXFPFPLPKSLERLLLGYNEISKLQTNA 181 + L+ NKI + I+ G ++ P PLP+SLE+L L N++S++ +Sbjct: 552 LNKNKITNYGIEKGALSQLKKLLFLFLEDNELEEVPSPLPRSLEQLQLARNKVSRIPQGT 731 + +Query: 182 MDGLVNLTMLDLCYNYLHDSLLKDKIFAKMEKLMQLNLCSNRLESMPPGLPSSLMYLSLE 241 + L NLT+LDL N L D+ + F ++ LMQLN+ N L +MPP LP++ M L L+ +Sbjct: 732 FSNLENLTLLDLQNNKLVDNAFQRDTFKGLKNLMQLNMAKNALRNMPPRLPANTMQLFLD 911 + +Query: 242 NNSISSIPEKYFDKLPKLHTLRMSHNKLQD--IPYNIFNLPNIVELSVGHNKLKQAFYIP 299 + NNSI IPE YF+ +PK+ LR++HNKL D +P F++ +I++L + HN+L + I +Sbjct: 912 NNSIEGIPENYFNVIPKVAFLRLNHNKLSDEGLPSRGFDVSSILDLQLSHNQLTKVPRIS 1091 + +Query: 300 RNLEHLYLQNNEIEKMNLTVMCPSIDPL--------HYHHLTYIRVDQNKLKEPISSYIF 351 + +L+HL+L +N+I+ +N++V+CPS L + HL Y+R+D N++K PI + +Sbjct: 1092AHLQHLHLDHNKIKSVNVSVICPSPSMLPAERDSFSYGPHLRYLRLDGNEIKPPIPMALM 1271 + +Query: 352 FCF 354 + CF +Sbjct: 1272TCF 1280 + + +>BC032498 + Length = 1640 + + Score = 224 bits (571), Expect = 2e-58 + Identities = 125/311 (40%), Positives = 176/311 (56%), Gaps = 12/311 (3%) + Frame = +2 + +Query: 62 CVSECFCPTNFPSSMYCDNRKLKTIPNIPMHIQQLYLQFNEIEAVTANSFINATHLKEIN 121 + C EC+CP +FPS++YCD+R L+ +P IP I LYLQ N I + SF NAT L+ IN +Sbjct: 335 CPRECYCPPDFPSALYCDSRNLRKVPVIPPRIHYLYLQNNFITELPVESFQNATGLRWIN 514 + +Query: 122 LSHNKIKSQKIDYGVFAKXXXXXXXXXXXXXXXXFPFPLPKSLERLLLGYNEISKLQTNA 181 + L +N+I+ KID V K P LP++LE+L L N IS++ +Sbjct: 515 LDNNRIR--KIDQRVLEKLPGLVFLYMEKNQLEEVPSALPRNLEQLRLSQNHISRIPPGV 688 + +Query: 182 MDGLVNLTMLDLCYNYLHDSLLKDKIFAKMEKLMQLNLCSNRLESMPPGLPSSLMYLSLE 241 + L NL +LDL +N L D + K F ++ LMQLNL N L MPP +P+++ L L+ +Sbjct: 689 FSKLENLLLLDLQHNRLSDGVFKPDTFHGLKNLMQLNLAHNILRKMPPRVPTAIHQLYLD 868 + +Query: 242 NNSISSIPEKYFDKLPKLHTLRMSHNKLQD--IPYNIFNLPNIVELSVGHNKLKQAFYIP 299 + +N I +IP YF P L +R+++NKL D +P N FN+ N++ L + HN++ I +Sbjct: 869 SNKIETIPNGYFKSFPNLAFIRLNYNKLTDRGLPKNSFNISNLLVLHLSHNRISSVPAIN 1048 + +Query: 300 RNLEHLYLQNNEIEKMNLTVMCPSIDPLHYH----------HLTYIRVDQNKLKEPISSY 349 + LEHLYL NN IEK+N T +CP+ D + +H HL Y+R+D N LK PI +Sbjct: 1049NRLEHLYLNNNSIEKINGTQICPN-DLVAFHDFSSDLENVPHLRYLRLDGNYLKPPIPLD 1225 + +Query: 350 IFFCFPHIHTI 360 + + CF + ++ +Sbjct: 1226LMMCFRLLQSV 1258 + + +>BT006707 + Length = 1017 + + Score = 212 bits (540), Expect = 9e-55 + Identities = 118/303 (38%), Positives = 180/303 (59%), Gaps = 5/303 (1%) + Frame = +1 + +Query: 47 QNVDYGVP---FHQYTLGCVSECFCPTNFPSSMYCDNRKLKTIPNIPMHIQQLYLQFNEI 103 + Q DY P + Q + C EC CP ++PS+MYCD KLK++P +P I+ LYL+ N+I +Sbjct: 55 QYYDYDFPLSIYGQSSPNCAPECNCPESYPSAMYCDELKLKSVPMVPPGIKYLYLRNNQI 234 + +Query: 104 EAVTANSFINATHLKEINLSHNKIKSQKIDYGVFAKXXXXXXXXXXXXXXXXFPFPLPKS 163 + + + +F N T L+ + L HN +++ KI VF+K PLPKS +Sbjct: 235 DHIDEKAFENVTDLQWLILDHNLLENSKIKGRVFSKLKQLKKLHINHNNLTESVGPLPKS 414 + +Query: 164 LERLLLGYNEISKLQTNAMDGLVNLTMLDLCYNYLHDSLLKDKIFAKMEKLMQLNLCSNR 223 + LE L L +N+I+KL + +GLVNLT + L +N L + + F ++ L L+L N+ +Sbjct: 415 LEDLQLTHNKITKL--GSFEGLVNLTFIHLQHNRLKEDAV-SAAFKGLKSLEYLDLSFNQ 585 + +Query: 224 LESMPPGLPSSLMYLSLENNSISSIPEKYFDKLPKLHTLRMSHNKLQD--IPYNIFNLPN 281 + + +P GLP SL+ L L+NN IS+IP++YF + L LR+SHN+L D IP N FN+ + +Sbjct: 586 IARLPSGLPVSLLTLYLDNNKISNIPDEYFKRFNALQYLRLSHNELADSGIPGNSFNVSS 765 + +Query: 282 IVELSVGHNKLKQAFYIPRNLEHLYLQNNEIEKMNLTVMCPSIDPLHYHHLTYIRVDQNK 341 + +VEL + +NKLK + NLE+ YL+ N++EK ++ C + PL Y + ++R+D N+ +Sbjct: 766 LVELDLSYNKLKNIPTVNENLENYYLEVNQLEKFDIKSFCKILGPLSYSKIKHLRLDGNR 945 + +Query: 342 LKE 344 + + E +Sbjct: 946 ISE 954 + + +>BC007038 + Length = 1804 + + Score = 212 bits (540), Expect = 9e-55 + Identities = 118/303 (38%), Positives = 180/303 (59%), Gaps = 5/303 (1%) + Frame = +1 + +Query: 47 QNVDYGVP---FHQYTLGCVSECFCPTNFPSSMYCDNRKLKTIPNIPMHIQQLYLQFNEI 103 + Q DY P + Q + C EC CP ++PS+MYCD KLK++P +P I+ LYL+ N+I +Sbjct: 196 QYYDYDFPLSIYGQSSPNCAPECNCPESYPSAMYCDELKLKSVPMVPPGIKYLYLRNNQI 375 + +Query: 104 EAVTANSFINATHLKEINLSHNKIKSQKIDYGVFAKXXXXXXXXXXXXXXXXFPFPLPKS 163 + + + +F N T L+ + L HN +++ KI VF+K PLPKS +Sbjct: 376 DHIDEKAFENVTDLQWLILDHNLLENSKIKGRVFSKLKQLKKLHINHNNLTESVGPLPKS 555 + +Query: 164 LERLLLGYNEISKLQTNAMDGLVNLTMLDLCYNYLHDSLLKDKIFAKMEKLMQLNLCSNR 223 + LE L L +N+I+KL + +GLVNLT + L +N L + + F ++ L L+L N+ +Sbjct: 556 LEDLQLTHNKITKL--GSFEGLVNLTFIHLQHNRLKEDAV-SAAFKGLKSLEYLDLSFNQ 726 + +Query: 224 LESMPPGLPSSLMYLSLENNSISSIPEKYFDKLPKLHTLRMSHNKLQD--IPYNIFNLPN 281 + + +P GLP SL+ L L+NN IS+IP++YF + L LR+SHN+L D IP N FN+ + +Sbjct: 727 IARLPSGLPVSLLTLYLDNNKISNIPDEYFKRFNALQYLRLSHNELADSGIPGNSFNVSS 906 + +Query: 282 IVELSVGHNKLKQAFYIPRNLEHLYLQNNEIEKMNLTVMCPSIDPLHYHHLTYIRVDQNK 341 + +VEL + +NKLK + NLE+ YL+ N++EK ++ C + PL Y + ++R+D N+ +Sbjct: 907 LVELDLSYNKLKNIPTVNENLENYYLEVNQLEKFDIKSFCKILGPLSYSKIKHLRLDGNR 1086 + +Query: 342 LKE 344 + + E +Sbjct: 1087ISE 1095 + + +>X75546 + Length = 1247 + + Score = 193 bits (491), Expect = 4e-49 + Identities = 106/295 (35%), Positives = 168/295 (56%), Gaps = 2/295 (0%) + Frame = +3 + +Query: 51 YGVPFHQYTLGCVSECFCPTNFPSSMYCDNRKLKTIPNIPMHIQQLYLQFNEIEAVTANS 110 + YG P C EC CP NF ++MYCDNR LK +P +P ++ +Y Q N+I ++ +Sbjct: 213 YGSPSPPDPRDCPQECDCPPNFLTAMYCDNRNLKYLPFVPSRMKYVYFQNNQITSIQEGV 392 + +Query: 111 FINATHLKEINLSHNKIKSQKIDYGVFAKXXXXXXXXXXXXXXXXFPFPLPKSLERLLLG 170 + F NAT L I L N+I S K+ VF+K P PLP+SL L L +Sbjct: 393 FDNATGLLWIALHGNQITSDKVGRKVFSKLRHLERLYLDHNNLTRMPGPLPRSLRELHLD 572 + +Query: 171 YNEISKLQTNAMDGLVNLTMLDLCYNYLHDSLLKDKIFAKMEKLMQLNLCSNRLESMPPG 230 + +N+IS++ NA++GL NLT L L ++ + + + L+ L+L N L +P G +Sbjct: 573 HNQISRVPNNALEGLENLTALYLQHDEIQE---VGSSMRGLRSLILLDLSYNHLRKVPDG 743 + +Query: 231 LPSSLMYLSLENNSISSIPEKYFDKLPKLHTLRMSHNKLQD--IPYNIFNLPNIVELSVG 288 + LPS+L L +E+N++ ++P+ YF PKL +R+SHN L + + N FN +++EL + +Sbjct: 744 LPSALEQLYMEHNNVYTVPDSYFRGAPKLLYVRLSHNSLTNNGLASNTFNSSSLLELDLS 923 + +Query: 289 HNKLKQAFYIPRNLEHLYLQNNEIEKMNLTVMCPSIDPLHYHHLTYIRVDQNKLK 343 + +N+L++ + NLE+LYLQ N I + +++ C +D +++ L +R+D N++K +Sbjct: 924 YNQLQKIPPVNTNLENLYLQGNRINEFSISSFCTVVDVVNFSKLQVVRLDGNEIK 1088 + + +>AY029191 + Length = 2466 + + Score = 110 bits (276), Expect = 4e-24 + Identities = 83/309 (26%), Positives = 150/309 (48%), Gaps = 8/309 (2%) + Frame = +3 + +Query: 43 FPFRQNVDYGVPFHQYTLGCVSECFCPTNFPSSMYCDNRKLKTIP-NIPMHIQQLYLQFN 101 + FP R+ + PF + + C C C + ++C + L ++P NIP + L LQ N +Sbjct: 399 FPTREPRSHFFPFDLFPM-CPFGCQC---YSRVVHCSDLGLTSVPTNIPFDTRMLDLQNN 566 + +Query: 102 EIEAVTANSFINATHLKEINLSHNKIKSQKIDYGVFAKXXXXXXXXXXXXXXXXFPFPLP 161 + +I+ + N F T L + L++NK+ KI F P LP +Sbjct: 567 KIKEIKENDFKGLTSLYGLILNNNKLT--KIHPKAFLTTKKLRRLYLSHNQLSEIPLNLP 740 + +Query: 162 KSLERLLLGYNEISKLQTNAMDGLVNLTMLDLCYNYLHDSLLKDKIFAKMEKLMQLNLCS 221 + KSL L + N++ K+Q + G+ L +L++ N L ++ ++ F + + + + +Sbjct: 741 KSLAELRIHENKVKKIQKDTFKGMNALHVLEMSANPLDNNGIEPGAFEGVT-VFHIRIAE 917 + +Query: 222 NRLESMPPGLPSSLMYLSLENNSISSIPEKYFDKLPKLHTLRMSHNKLQDIPY-NIFNLP 280 + +L S+P GLP +L+ L L+ N IS++ + F + +L L + +NK+ DI ++ N+P +Sbjct: 918 AKLTSVPKGLPPTLLELHLDYNKISTVELEDFKRYKELQRLGLGNNKITDIENGSLANIP 1097 + +Query: 281 NIVELSVGHNKLKQAFYIPRNLEHL------YLQNNEIEKMNLTVMCPSIDPLHYHHLTY 334 + + E+ + +NKLK+ IP L L +L +N I ++ + CP++ + + +Sbjct: 1098RVREIHLENNKLKK---IPSGLPELKYLQIIFLHSNSIARVGVNDFCPTVPKMKKSLYSA 1268 + +Query: 335 IRVDQNKLK 343 + I + N +K +Sbjct: 1269ISLFNNPVK 1295 + + +>BC028292 + Length = 3001 + + Score = 100 bits (248), Expect = 6e-21 + Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 1/191 (0%) + Frame = +1 + +Query: 80 NRKLKTIPN-IPMHIQQLYLQFNEIEAVTANSFINATHLKEINLSHNKIKSQKIDYGVFA 138 + N L+ +P+ +P ++ L + N+I + F L+E+NLS+N+I S ++ F +Sbjct: 1237 NNALERVPSGLPRRVRTLMILHNQITGIGREDFATTYFLEELNLSYNRITSPQVHRDAFR 1416 + +Query: 139 KXXXXXXXXXXXXXXXXFPFPLPKSLERLLLGYNEISKLQTNAMDGLVNLTMLDLCYNYL 198 + K P LP+++ L + NE++ L A+ G+ L L L N L +Sbjct: 1417 KLRLLRSLDLSGNRLHTLPPGLPRNVHVLKVKRNELAALARGALAGMAQLRELYLTSNRL 1596 + +Query: 199 HDSLLKDKIFAKMEKLMQLNLCSNRLESMPPGLPSSLMYLSLENNSISSIPEKYFDKLPK 258 + L + + + L L++ N+L +P GLP SL YL L+NN IS++P FD P +Sbjct: 1597 RSRALGPRAWVDLAHLQLLDIAGNQLTEIPEGLPESLEYLYLQNNKISAVPANAFDSTPN 1776 + +Query: 259 LHTLRMSHNKL 269 + L + + NKL +Sbjct: 1777 LKGIFLRFNKL 1809 + + + + Score = 84.0 bits (206), Expect = 5e-16 + Identities = 64/257 (24%), Positives = 118/257 (45%), Gaps = 5/257 (1%) + Frame = +1 + +Query: 61 GCVSECFCPTNFPSSMYCDNRKLKTIP-NIPMHIQQLYLQFNEIEAVTANSFINATHLKE 119 + G +E F + + + L +P +P + L+L+ N I +V AN L+ +Sbjct: 967 GLDNETFWKLSSLEYLDLSSNNLSRVPAGLPRSLVLLHLEKNAIRSVDANVLTPIRSLEY 1146 + +Query: 120 INLSHNKIKSQKIDYGVFAKXXXXXXXXXXXXXXXXFPFPLPKSLERLLLGYNEISKLQT 179 + + L N+++ Q I F P LP+ + L++ +N+I+ + +Sbjct: 1147 LLLHSNQLREQGIHPLAFQGLKRLHTVHLYNNALERVPSGLPRRVRTLMILHNQITGIGR 1326 + +Query: 180 NAMDGLVNLTMLDLCYNYLHDSLLKDKIFAKMEKLMQLNLCSNRLESMPPGLPSSLMYLS 239 + L L+L YN + + F K+ L L+L NRL ++PPGLP ++ L +Sbjct: 1327 EDFATTYFLEELNLSYNRITSPQVHRDAFRKLRLLRSLDLSGNRLHTLPPGLPRNVHVLK 1506 + +Query: 240 LENNSISSIPEKYFDKLPKLHTLRMSHNKLQDI---PYNIFNLPNIVELSVGHNKLKQ-A 295 + ++ N ++++ + +L L ++ N+L+ P +L ++ L + N+L + +Sbjct: 1507 VKRNELAALARGALAGMAQLRELYLTSNRLRSRALGPRAWVDLAHLQLLDIAGNQLTEIP 1686 + +Query: 296 FYIPRNLEHLYLQNNEI 312 + +P +LE+LYLQNN+I +Sbjct: 1687 EGLPESLEYLYLQNNKI 1737 + + + + Score = 79.7 bits (195), Expect = 9e-15 + Identities = 64/242 (26%), Positives = 108/242 (44%), Gaps = 5/242 (2%) + Frame = +1 + +Query: 76 MYCDNRKLKTIPN-IPMHIQQLYLQFNEIEAVTANSFINATHLKEINLSHNKIKSQKIDY 134 + +Y N KL P +P + + N + + +F +L+ + L +NK+ + +Sbjct: 586 LYLANNKLTLAPRFLPNALISVDFAANYLTKIYGLTFGQKPNLRSVYLHNNKLADAGLPD 765 + +Query: 135 GVFAKXXXXXXXXXXXXXXXXFPFPLPKSLERLLLGYNEISKLQTNAMDGLVNLTMLDLC 194 + +F P LP +L +L L N++ K+ A L +L L L +Sbjct: 766 NMFNGSSNVEVLILSSNFLRHVPKHLPPALYKLHLKNNKLEKIPPGAFSELSSLRELYLQ 945 + +Query: 195 YNYLHDSLLKDKIFAKMEKLMQLNLCSNRLESMPPGLPSSLMYLSLENNSISSIPEKYFD 254 + NYL D L ++ F K+ L L+L SN L +P GLP SL+ L LE N+I S+ +Sbjct: 946 NNYLTDEGLDNETFWKLSSLEYLDLSSNNLSRVPAGLPRSLVLLHLEKNAIRSVDANVLT 1125 + +Query: 255 KLPKLHTLRMSHNKLQD---IPYNIFNLPNIVELSVGHNKLKQA-FYIPRNLEHLYLQNN 310 + + L L + N+L++ P L + + + +N L++ +PR + L + +N +Sbjct: 1126PIRSLEYLLLHSNQLREQGIHPLAFQGLKRLHTVHLYNNALERVPSGLPRRVRTLMILHN 1305 + +Query: 311 EI 312 + +I +Sbjct: 1306QI 1311 + + + + Score = 40.4 bits (93), Expect = 0.006 + Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 4/96 (4%) + Frame = +1 + +Query: 224 LESMPPGLPSSLMYLSLENNSISSIPEKYFDKLPKLHTLRMSHNKL--QDIPYNIF-NLP 280 + L P LP +LSL+NN + I + +L +L TL + +N+L + +P F +L +Sbjct: 394 LREFPGDLPEHTNHLSLQNNQLEKIYPEELSRLHRLETLNLQNNRLTSRGLPEKAFEHLT 573 + +Query: 281 NIVELSVGHNKLKQA-FYIPRNLEHLYLQNNEIEKM 315 + N+ L + +NKL A ++P L + N + K+ +Sbjct: 574 NLNYLYLANNKLTLAPRFLPNALISVDFAANYLTKI 681 + + +>AY313607 + Length = 2012 + + Score = 99.8 bits (247), Expect = 8e-21 + Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 1/191 (0%) + Frame = +2 + +Query: 80 NRKLKTIPN-IPMHIQQLYLQFNEIEAVTANSFINATHLKEINLSHNKIKSQKIDYGVFA 138 + N L+ +P+ +P ++ L + N+I + F L+E+NLS+N+I S ++ F +Sbjct: 1253 NNALERVPSGLPRRVRTLMILHNQITGIGREDFATTYFLEELNLSYNRITSPQVHRDAFR 1432 + +Query: 139 KXXXXXXXXXXXXXXXXFPFPLPKSLERLLLGYNEISKLQTNAMDGLVNLTMLDLCYNYL 198 + K P LP+++ L + NE++ L A+ G+ L L L N L +Sbjct: 1433 KLRLLRSLDLSGNRLHMLPPGLPRNVHVLKVKRNELAALARGALAGMAQLRELYLTSNRL 1612 + +Query: 199 HDSLLKDKIFAKMEKLMQLNLCSNRLESMPPGLPSSLMYLSLENNSISSIPEKYFDKLPK 258 + L + + + L L++ N+L +P GLP SL YL L+NN IS++P FD P +Sbjct: 1613 RSRALGPRAWVDLAHLQLLDIAGNQLTEIPEGLPESLEYLYLQNNKISAVPANAFDSTPN 1792 + +Query: 259 LHTLRMSHNKL 269 + L + + NKL +Sbjct: 1793 LKGIFLRFNKL 1825 + + + + Score = 83.2 bits (204), Expect = 8e-16 + Identities = 64/257 (24%), Positives = 117/257 (45%), Gaps = 5/257 (1%) + Frame = +2 + +Query: 61 GCVSECFCPTNFPSSMYCDNRKLKTIP-NIPMHIQQLYLQFNEIEAVTANSFINATHLKE 119 + G +E F + + + L +P +P + L+L+ N I +V AN L+ +Sbjct: 983 GLDNETFWKLSSLEYLDLSSNNLSRVPAGLPRSLVLLHLEKNAIRSVDANVLTPIRSLEY 1162 + +Query: 120 INLSHNKIKSQKIDYGVFAKXXXXXXXXXXXXXXXXFPFPLPKSLERLLLGYNEISKLQT 179 + + L N+++ Q I F P LP+ + L++ +N+I+ + +Sbjct: 1163 LLLHSNQLREQGIHPLAFQGLKRLHTVHLYNNALERVPSGLPRRVRTLMILHNQITGIGR 1342 + +Query: 180 NAMDGLVNLTMLDLCYNYLHDSLLKDKIFAKMEKLMQLNLCSNRLESMPPGLPSSLMYLS 239 + L L+L YN + + F K+ L L+L NRL +PPGLP ++ L +Sbjct: 1343 EDFATTYFLEELNLSYNRITSPQVHRDAFRKLRLLRSLDLSGNRLHMLPPGLPRNVHVLK 1522 + +Query: 240 LENNSISSIPEKYFDKLPKLHTLRMSHNKLQDI---PYNIFNLPNIVELSVGHNKLKQ-A 295 + ++ N ++++ + +L L ++ N+L+ P +L ++ L + N+L + +Sbjct: 1523 VKRNELAALARGALAGMAQLRELYLTSNRLRSRALGPRAWVDLAHLQLLDIAGNQLTEIP 1702 + +Query: 296 FYIPRNLEHLYLQNNEI 312 + +P +LE+LYLQNN+I +Sbjct: 1703 EGLPESLEYLYLQNNKI 1753 + + + + Score = 79.7 bits (195), Expect = 9e-15 + Identities = 64/242 (26%), Positives = 108/242 (44%), Gaps = 5/242 (2%) + Frame = +2 + +Query: 76 MYCDNRKLKTIPN-IPMHIQQLYLQFNEIEAVTANSFINATHLKEINLSHNKIKSQKIDY 134 + +Y N KL P +P + + N + + +F +L+ + L +NK+ + +Sbjct: 602 LYLANNKLTLAPRFLPNALISVDFAANYLTKIYGLTFGQKPNLRSVYLHNNKLADAGLPD 781 + +Query: 135 GVFAKXXXXXXXXXXXXXXXXFPFPLPKSLERLLLGYNEISKLQTNAMDGLVNLTMLDLC 194 + +F P LP +L +L L N++ K+ A L +L L L +Sbjct: 782 NMFNGSSNVEVLILSSNFLRHVPKHLPPALYKLHLKNNKLEKIPPGAFSELSSLRELYLQ 961 + +Query: 195 YNYLHDSLLKDKIFAKMEKLMQLNLCSNRLESMPPGLPSSLMYLSLENNSISSIPEKYFD 254 + NYL D L ++ F K+ L L+L SN L +P GLP SL+ L LE N+I S+ +Sbjct: 962 NNYLTDEGLDNETFWKLSSLEYLDLSSNNLSRVPAGLPRSLVLLHLEKNAIRSVDANVLT 1141 + +Query: 255 KLPKLHTLRMSHNKLQD---IPYNIFNLPNIVELSVGHNKLKQA-FYIPRNLEHLYLQNN 310 + + L L + N+L++ P L + + + +N L++ +PR + L + +N +Sbjct: 1142PIRSLEYLLLHSNQLREQGIHPLAFQGLKRLHTVHLYNNALERVPSGLPRRVRTLMILHN 1321 + +Query: 311 EI 312 + +I +Sbjct: 1322QI 1327 + + + + Score = 40.4 bits (93), Expect = 0.006 + Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 4/96 (4%) + Frame = +2 + +Query: 224 LESMPPGLPSSLMYLSLENNSISSIPEKYFDKLPKLHTLRMSHNKL--QDIPYNIF-NLP 280 + L P LP +LSL+NN + I + +L +L TL + +N+L + +P F +L +Sbjct: 410 LREFPGDLPEHTNHLSLQNNQLEKIYPEELSRLHRLETLNLQNNRLTSRGLPEKAFEHLT 589 + +Query: 281 NIVELSVGHNKLKQA-FYIPRNLEHLYLQNNEIEKM 315 + N+ L + +NKL A ++P L + N + K+ +Sbjct: 590 NLNYLYLANNKLTLAPRFLPNALISVDFAANYLTKI 697 + + +>NM_133503 + Length = 1669 + + Score = 95.1 bits (235), Expect = 2e-19 + Identities = 76/269 (28%), Positives = 122/269 (45%), Gaps = 8/269 (2%) + Frame = +1 + +Query: 62 CVSECFCPTNFPSSMYCDNRKLKTIP-NIPMHIQQLYLQFNEIEAVTANSFINATHLKEI 120 + C C C + C + L +P ++P L LQ N+I + F N +L + +Sbjct: 277 CPFRCQCHLRV---VQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHAL 447 + +Query: 121 NLSHNKIKSQKIDYGVFAKXXXXXXXXXXXXXXXXFPFPLPKSLERLLLGYNEISKLQTN 180 + L +NKI K+ G F P +PK+L+ L NEI+K++ +Sbjct: 448 ILVNNKIS--KVSPGAFTPLVKLERLYLSKNQLKELPEKMPKTLQELRAHENEITKVRKV 621 + +Query: 181 AMDGLVNLTMLDLCYNYLHDSLLKDKIFAKMEKLMQLNLCSNRLESMPPGLPSSLMYLSL 240 + +GL + +++L N L S +++ F M+KL + + + S+P GLP SL L L +Sbjct: 622 TFNGLNQMIVIELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITSIPQGLPPSLTELHL 801 + +Query: 241 ENNSISSIPEKYFDKLPKLHTLRMSHNKLQDIPY-NIFNLPNIVELSVGHNKLKQAFYIP 299 + + N IS + L L L +S N + + ++ N P++ EL + +NKL + +P +Sbjct: 802 DGNKISRVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLDNNKLTR---VP 972 + +Query: 300 RNL-EH-----LYLQNNEIEKMNLTVMCP 322 + L EH +YL NN I + + CP +Sbjct: 973 GGLAEHKYIQVVYLHNNNISVVGSSDFCP 1059 + + + Database: /cluster/bluearc/markd/snpProtein/kgMrna.fa + Posted date: Nov 13, 2003 9:35 AM + Number of letters in database: 89,350,383 + Number of sequences in database: 37,452 + +Lambda K H + 0.323 0.140 0.427 + +Gapped +Lambda K H + 0.267 0.0410 0.140 + + +Matrix: BLOSUM62 +Gap Penalties: Existence: 11, Extension: 1 +Number of Hits to DB: 43,656,046 +Number of Sequences: 37452 +Number of extensions: 631200 +Number of successful extensions: 4405 +Number of sequences better than 10.0: 191 +Number of HSP's better than 10.0 without gapping: 2277 +Number of HSP's successfully gapped in prelim test: 161 +Number of HSP's that attempted gapping in prelim test: 1641 +Number of HSP's gapped (non-prelim): 2776 +length of query: 421 +length of database: 29,783,461 +effective HSP length: 110 +effective length of query: 311 +effective length of database: 25,663,741 +effective search space: 7981423451 +effective search space used: 7981423451 +frameshift window, decay const: 50, 0.1 +T: 13 +A: 40 +X1: 16 ( 7.5 bits) +X2: 38 (14.6 bits) +X3: 64 (24.7 bits) +S1: 41 (21.9 bits) +S2: 65 (29.6 bits) +TBLASTN 2.2.6 [Apr-09-2003] + + +Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, +Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), +"Gapped BLAST and PSI-BLAST: a new generation of protein database search +programs", Nucleic Acids Res. 25:3389-3402. + +Query= Q99984 + (413 letters) + +Database: /cluster/bluearc/markd/snpProtein/kgMrna.fa + 37,452 sequences; 89,350,383 total letters + +Searching..................................................done + + Score E +Sequences producing significant alignments: (bits) Value + +AB000115 827 0.0 +AL832618 583 e-166 +BC022870 323 3e-88 +AF117333 34 0.55 +U49248 32 2.1 +BC027613 32 2.7 +AF520706 31 4.6 +AF520704 31 4.6 +AF520705 31 4.6 +AL834225 31 4.6 + +>AB000115 + Length = 2058 + + Score = 827 bits (2136), Expect = 0.0 + Identities = 413/413 (100%), Positives = 413/413 (100%) + Frame = +2 + +Query: 1 MVERCSRQGCTITMAYIDYNMIVAFMLGNYINLRESSTEPNDSLWFSLQKKNDTTEIETL 60 + MVERCSRQGCTITMAYIDYNMIVAFMLGNYINLRESSTEPNDSLWFSLQKKNDTTEIETL +Sbjct: 242 MVERCSRQGCTITMAYIDYNMIVAFMLGNYINLRESSTEPNDSLWFSLQKKNDTTEIETL 421 + +Query: 61 LLNTAPKIIDEQLVCRLSKTDIFIICRDNKIYLDKMITRNLKLRFYGHRQYLECEVFRVE 120 + LLNTAPKIIDEQLVCRLSKTDIFIICRDNKIYLDKMITRNLKLRFYGHRQYLECEVFRVE +Sbjct: 422 LLNTAPKIIDEQLVCRLSKTDIFIICRDNKIYLDKMITRNLKLRFYGHRQYLECEVFRVE 601 + +Query: 121 GIKDNLDDIKRIIKAREHRNRLLADIRDYRPYADLVSEIRILLVGPVGSGKSSFFNSVKS 180 + GIKDNLDDIKRIIKAREHRNRLLADIRDYRPYADLVSEIRILLVGPVGSGKSSFFNSVKS +Sbjct: 602 GIKDNLDDIKRIIKAREHRNRLLADIRDYRPYADLVSEIRILLVGPVGSGKSSFFNSVKS 781 + +Query: 181 IFHGHVTGQAVVGSDTTSITERYRIYSVKDGKNGKSLPFMLCDTMGLDGAEGAGLCMDDI 240 + IFHGHVTGQAVVGSDTTSITERYRIYSVKDGKNGKSLPFMLCDTMGLDGAEGAGLCMDDI +Sbjct: 782 IFHGHVTGQAVVGSDTTSITERYRIYSVKDGKNGKSLPFMLCDTMGLDGAEGAGLCMDDI 961 + +Query: 241 PHILKGCMPDRYQFNSRKPITPEHSTFITSPSLKDRIHCVAYVLDINSIDNLYSKMLAKV 300 + PHILKGCMPDRYQFNSRKPITPEHSTFITSPSLKDRIHCVAYVLDINSIDNLYSKMLAKV +Sbjct: 962 PHILKGCMPDRYQFNSRKPITPEHSTFITSPSLKDRIHCVAYVLDINSIDNLYSKMLAKV 1141 + +Query: 301 KQVHKEVLNCGIAYVALLTKVDDCSEVLQDNFLNMSRSMTSQSRVMNVHKMLGIPISNIL 360 + KQVHKEVLNCGIAYVALLTKVDDCSEVLQDNFLNMSRSMTSQSRVMNVHKMLGIPISNIL +Sbjct: 1142KQVHKEVLNCGIAYVALLTKVDDCSEVLQDNFLNMSRSMTSQSRVMNVHKMLGIPISNIL 1321 + +Query: 361 MVGNYASDLELDPMKDILILSALRQMLRAADDFLEDLPLEETGAIERALQPCI 413 + MVGNYASDLELDPMKDILILSALRQMLRAADDFLEDLPLEETGAIERALQPCI +Sbjct: 1322MVGNYASDLELDPMKDILILSALRQMLRAADDFLEDLPLEETGAIERALQPCI 1480 + + +>AL832618 + Length = 4757 + + Score = 583 bits (1504), Expect = e-166 + Identities = 292/293 (99%), Positives = 293/293 (100%) + Frame = +2 + +Query: 121 GIKDNLDDIKRIIKAREHRNRLLADIRDYRPYADLVSEIRILLVGPVGSGKSSFFNSVKS 180 + GIKDNLDDIKRIIKAREHRNRLLADIRDYRPYADLVSEIRILLVGPVGSGKSSFFNSVKS +Sbjct: 3281 GIKDNLDDIKRIIKAREHRNRLLADIRDYRPYADLVSEIRILLVGPVGSGKSSFFNSVKS 3460 + +Query: 181 IFHGHVTGQAVVGSDTTSITERYRIYSVKDGKNGKSLPFMLCDTMGLDGAEGAGLCMDDI 240 + IFHGHVTGQAVVGSDTTSITERYRIYSVKDGKNGKSLPFMLCDTMGLDGAEGAGLCMDDI +Sbjct: 3461 IFHGHVTGQAVVGSDTTSITERYRIYSVKDGKNGKSLPFMLCDTMGLDGAEGAGLCMDDI 3640 + +Query: 241 PHILKGCMPDRYQFNSRKPITPEHSTFITSPSLKDRIHCVAYVLDINSIDNLYSKMLAKV 300 + PHILKGCMPDRYQFNSRKPITPEHSTFITSPSLKDRIHCVAYVLDINS+DNLYSKMLAKV +Sbjct: 3641 PHILKGCMPDRYQFNSRKPITPEHSTFITSPSLKDRIHCVAYVLDINSMDNLYSKMLAKV 3820 + +Query: 301 KQVHKEVLNCGIAYVALLTKVDDCSEVLQDNFLNMSRSMTSQSRVMNVHKMLGIPISNIL 360 + KQVHKEVLNCGIAYVALLTKVDDCSEVLQDNFLNMSRSMTSQSRVMNVHKMLGIPISNIL +Sbjct: 3821 KQVHKEVLNCGIAYVALLTKVDDCSEVLQDNFLNMSRSMTSQSRVMNVHKMLGIPISNIL 4000 + +Query: 361 MVGNYASDLELDPMKDILILSALRQMLRAADDFLEDLPLEETGAIERALQPCI 413 + MVGNYASDLELDPMKDILILSALRQMLRAADDFLEDLPLEETGAIERALQPCI +Sbjct: 4001 MVGNYASDLELDPMKDILILSALRQMLRAADDFLEDLPLEETGAIERALQPCI 4159 + + + + Score = 245 bits (625), Expect = 1e-64 + Identities = 119/122 (97%), Positives = 120/122 (98%) + Frame = +3 + +Query: 1 MVERCSRQGCTITMAYIDYNMIVAFMLGNYINLRESSTEPNDSLWFSLQKKNDTTEIETL 60 + MVERCSRQGCTITM YIDYNMIVAFMLGNYINLRESSTEPNDSLWFSLQKKNDTTEIETL +Sbjct: 2364 MVERCSRQGCTITMVYIDYNMIVAFMLGNYINLRESSTEPNDSLWFSLQKKNDTTEIETL 2543 + +Query: 61 LLNTAPKIIDEQLVCRLSKTDIFIICRDNKIYLDKMITRNLKLRFYGHRQYLECEVFRVE 120 + LLNTAPKIIDEQLVCRLSKTDIFIICRDNKIYLDKMITRNLKLRFYGHRQYLEC VFRVE +Sbjct: 2544 LLNTAPKIIDEQLVCRLSKTDIFIICRDNKIYLDKMITRNLKLRFYGHRQYLECGVFRVE 2723 + +Query: 121 GI 122 + G+ +Sbjct: 2724 GM 2729 + + +>BC022870 + Length = 1714 + + Score = 323 bits (829), Expect = 3e-88 + Identities = 185/416 (44%), Positives = 267/416 (64%), Gaps = 4/416 (0%) + Frame = +3 + +Query: 1 MVERCSRQGCTITMAYIDYNMIVAFMLGNYINLRESSTEPNDSLWFSLQKKNDTTEIETL 60 + +++RC QG T+T+ Y + ++I A+ +Y + +S + F+LQ DT E +Sbjct: 207 LLDRCCNQGPTLTVIYSEDHIIGAYAEESYQEGKYASI-----ILFALQ---DTKISEWK 362 + +Query: 61 LLNTAPKIIDEQLVCRLSK----TDIFIICRDNKIYLDKMITRNLKLRFYGHRQYLECEV 116 + L P+ + C ++K T+ I R+ K+ +D NL L + EV +Sbjct: 363 LGLCTPETL---FCCDVTKYNSPTNFQIDGRNRKVIMDLKTMENLGLAQNCTISIQDYEV 533 + +Query: 117 FRVEGIKDNLDDIKRIIKAREHRNRLLADIRDYRPYADLVSEIRILLVGPVGSGKSSFFN 176 + FR E D+LD+ ++I E R LL+ +R Y PY LV +IRILL+GP+G+GKSSFFN +Sbjct: 534 FRCE---DSLDE-RKIKGVIELRKSLLSALRTYEPYGSLVQQIRILLLGPIGAGKSSFFN 701 + +Query: 177 SVKSIFHGHVTGQAVVGSDTTSITERYRIYSVKDGKNGKSLPFMLCDTMGLDGAEGAGLC 236 + SV+S+F GHVT QA+VG++TT I+E+YR YS++DGK+GK LPF+LCD++GL EG GLC +Sbjct: 702 SVRSVFQGHVTHQALVGTNTTGISEKYRTYSIRDGKDGKYLPFILCDSLGLSEKEG-GLC 878 + +Query: 237 MDDIPHILKGCMPDRYQFNSRKPITPEHSTFITSPSLKDRIHCVAYVLDINSIDNLYSKM 296 + DDI +IL G + DRYQFN + I H +I SPSLKDRIHCVA+V D +SI S+M +Sbjct: 879 RDDIFYILNGNIRDRYQFNPMESIKLNHHDYIDSPSLKDRIHCVAFVFDASSIQYFSSQM 1058 + +Query: 297 LAKVKQVHKEVLNCGIAYVALLTKVDDCSEVLQDNFLNMSRSMTSQSRVMNVHKMLGIPI 356 + + K+K++ +E++N G+ +VALLT VD + + + + + R +S++ V + LG + +Sbjct: 1059IVKIKRIRRELVNAGVVHVALLTHVDSMDLITKGDLIEIERCEPVRSKLEEVQRKLGFAL 1238 + +Query: 357 SNILMVGNYASDLELDPMKDILILSALRQMLRAADDFLEDLPLEETGAIERALQPC 412 + S+I +V NY+S+ ELDP+KD+LILSALR+ML AADDFLEDLP E+ G + + C +Sbjct: 1239SDISVVSNYSSEWELDPVKDVLILSALRRMLWAADDFLEDLPFEQIGNLREEIINC 1406 + + +>AF117333 + Length = 1951 + + Score = 33.9 bits (76), Expect = 0.55 + Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%) + Frame = +3 + +Query: 157 SEIRILLVGPVGSGKSSFFNSV--KSIFHGHVTGQAVVGSDTTSITERYRIYSVKDGKNG 214 + S++RI+LVG G+GKS+ NS+ + +FH G+ SIT++ K + +Sbjct: 135 SQLRIVLVGKTGAGKSATGNSILGRKVFHS--------GTAAKSITKKCE----KRSSSW 278 + +Query: 215 KSLPFMLCDTMGLDGAE 231 + K ++ DT G+ E +Sbjct: 279 KETELVVVDTPGIFDTE 329 + + +>U49248 + Length = 5300 + + Score = 32.0 bits (71), Expect = 2.1 + Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 3/47 (6%) + Frame = +3 + +Query: 144 ADIRDYRPYADLVSEIRILLVGPVGSGKSSFFNSV---KSIFHGHVT 187 + A +RD D+++ + ++GPVGSGKSS +++ HGH+T +Sbjct: 2055 ATVRDVN--LDIMAGQLVAVIGPVGSGKSSLISAMLGEMENVHGHIT 2189 + + +>BC027613 + Length = 1237 + + Score = 31.6 bits (70), Expect = 2.7 + Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%) + Frame = +3 + +Query: 159 IRILLVGPVGSGKSSFFNSV--KSIFHGHVTGQAV 191 + +RI+LVG GSGKS+ N++ + IF + QAV +Sbjct: 144 LRIVLVGKTGSGKSATANTILGEEIFDSRIAAQAV 248 + + +>AF520706 + Length = 4419 + + Score = 30.8 bits (68), Expect = 4.6 + Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%) + Frame = +1 + +Query: 311 GIAYVALLTKVDDCSE---VLQDNFLNMSRSMTSQSRVMNVHKMLGIPISNILMVGNYAS 367 + GI ++A T V DC V + +M+ S T S V ++ LG+P MV NY S +Sbjct: 1393 GITFLAAGTSVPDCMASLIVARQGLGDMAVSNTIGSNVFDILVGLGVPWGLQTMVVNYGS 1572 + +Query: 368 DLELD 372 + ++++ +Sbjct: 1573 TVKIN 1587 + + +>AF520704 + Length = 4467 + + Score = 30.8 bits (68), Expect = 4.6 + Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%) + Frame = +1 + +Query: 311 GIAYVALLTKVDDCSE---VLQDNFLNMSRSMTSQSRVMNVHKMLGIPISNILMVGNYAS 367 + GI ++A T V DC V + +M+ S T S V ++ LG+P MV NY S +Sbjct: 1441 GITFLAAGTSVPDCMASLIVARQGLGDMAVSNTIGSNVFDILVGLGVPWGLQTMVVNYGS 1620 + +Query: 368 DLELD 372 + ++++ +Sbjct: 1621 TVKIN 1635 + + +>AF520705 + Length = 4410 + + Score = 30.8 bits (68), Expect = 4.6 + Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%) + Frame = +1 + +Query: 311 GIAYVALLTKVDDCSE---VLQDNFLNMSRSMTSQSRVMNVHKMLGIPISNILMVGNYAS 367 + GI ++A T V DC V + +M+ S T S V ++ LG+P MV NY S +Sbjct: 1384 GITFLAAGTSVPDCMASLIVARQGLGDMAVSNTIGSNVFDILVGLGVPWGLQTMVVNYGS 1563 + +Query: 368 DLELD 372 + ++++ +Sbjct: 1564 TVKIN 1578 + + +>AL834225 + Length = 4766 + + Score = 30.8 bits (68), Expect = 4.6 + Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%) + Frame = +3 + +Query: 311 GIAYVALLTKVDDCSE---VLQDNFLNMSRSMTSQSRVMNVHKMLGIPISNILMVGNYAS 367 + GI ++A T V DC V + +M+ S T S V ++ LG+P MV NY S +Sbjct: 1722 GITFLAAGTSVPDCMASLIVARQGLGDMAVSNTIGSNVFDILVGLGVPWGLQTMVVNYGS 1901 + +Query: 368 DLELD 372 + ++++ +Sbjct: 1902 TVKIN 1916 + + + Database: /cluster/bluearc/markd/snpProtein/kgMrna.fa + Posted date: Nov 13, 2003 9:35 AM + Number of letters in database: 89,350,383 + Number of sequences in database: 37,452 + +Lambda K H + 0.323 0.139 0.405 + +Gapped +Lambda K H + 0.267 0.0410 0.140 + + +Matrix: BLOSUM62 +Gap Penalties: Existence: 11, Extension: 1 +Number of Hits to DB: 38,751,458 +Number of Sequences: 37452 +Number of extensions: 523993 +Number of successful extensions: 2368 +Number of sequences better than 10.0: 12 +Number of HSP's better than 10.0 without gapping: 1324 +Number of HSP's successfully gapped in prelim test: 150 +Number of HSP's that attempted gapping in prelim test: 1003 +Number of HSP's gapped (non-prelim): 1545 +length of query: 413 +length of database: 29,783,461 +effective HSP length: 109 +effective length of query: 304 +effective length of database: 25,701,193 +effective search space: 7813162672 +effective search space used: 7813162672 +frameshift window, decay const: 50, 0.1 +T: 13 +A: 40 +X1: 16 ( 7.4 bits) +X2: 38 (14.6 bits) +X3: 64 (24.7 bits) +S1: 41 (21.9 bits) +S2: 65 (29.6 bits) +TBLASTN 2.2.6 [Apr-09-2003] + + +Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, +Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), +"Gapped BLAST and PSI-BLAST: a new generation of protein database search +programs", Nucleic Acids Res. 25:3389-3402. + +Query= Q99985 + (751 letters) + +Database: /cluster/bluearc/markd/snpProtein/kgMrna.fa + 37,452 sequences; 89,350,383 total letters + +Searching..................................................done + + Score E +Sequences producing significant alignments: (bits) Value + +AB000220 1547 0.0 +U38276 832 0.0 +BC042914 821 0.0 +L26081 708 0.0 +AB002329 648 0.0 +U28369 640 0.0 +BC024220 634 0.0 +AB029496 584 e-166 +BC009113 574 e-163 +BC029590 424 e-118 + +>AB000220 + Length = 5177 + + Score = 1547 bits (4005), Expect = 0.0 + Identities = 751/751 (100%), Positives = 751/751 (100%) + Frame = +2 + +Query: 1 MAFRTICVLVGVFICSICVKGSSQPQARVYLTFDELRETKTSEYFSLSHHPLDYRILLMD 60 + MAFRTICVLVGVFICSICVKGSSQPQARVYLTFDELRETKTSEYFSLSHHPLDYRILLMD +Sbjct: 563 MAFRTICVLVGVFICSICVKGSSQPQARVYLTFDELRETKTSEYFSLSHHPLDYRILLMD 742 + +Query: 61 EDQDRIYVGSKDHILSLNINNISQEALSVFWPASTIKVEECKMAGKDPTHGCGNFVRVIQ 120 + EDQDRIYVGSKDHILSLNINNISQEALSVFWPASTIKVEECKMAGKDPTHGCGNFVRVIQ +Sbjct: 743 EDQDRIYVGSKDHILSLNINNISQEALSVFWPASTIKVEECKMAGKDPTHGCGNFVRVIQ 922 + +Query: 121 TFNRTHLYVCGSGAFSPVCTYLNRGRRSEDQVFMIDSKCESGKGRCSFNPNVNTVSVMIN 180 + TFNRTHLYVCGSGAFSPVCTYLNRGRRSEDQVFMIDSKCESGKGRCSFNPNVNTVSVMIN +Sbjct: 923 TFNRTHLYVCGSGAFSPVCTYLNRGRRSEDQVFMIDSKCESGKGRCSFNPNVNTVSVMIN 1102 + +Query: 181 EELFSGMYIDFMGTDAAIFRSLTKRNAVRTDQHNSKWLSEPMFVDAHVIPDGTDPNDAKV 240 + EELFSGMYIDFMGTDAAIFRSLTKRNAVRTDQHNSKWLSEPMFVDAHVIPDGTDPNDAKV +Sbjct: 1103 EELFSGMYIDFMGTDAAIFRSLTKRNAVRTDQHNSKWLSEPMFVDAHVIPDGTDPNDAKV 1282 + +Query: 241 YFFFKEKLTDNNRSTKQIHSMIARICPNDTGGLRSLVNKWTTFLKARLVCSVTDEDGPET 300 + YFFFKEKLTDNNRSTKQIHSMIARICPNDTGGLRSLVNKWTTFLKARLVCSVTDEDGPET +Sbjct: 1283 YFFFKEKLTDNNRSTKQIHSMIARICPNDTGGLRSLVNKWTTFLKARLVCSVTDEDGPET 1462 + +Query: 301 HFDELEDVFLLETDNPRTTLVYGIFTTSSSVFKGSAVCVYHLSDIQTVFNGPFAHKEGPN 360 + HFDELEDVFLLETDNPRTTLVYGIFTTSSSVFKGSAVCVYHLSDIQTVFNGPFAHKEGPN +Sbjct: 1463 HFDELEDVFLLETDNPRTTLVYGIFTTSSSVFKGSAVCVYHLSDIQTVFNGPFAHKEGPN 1642 + +Query: 361 HQLISYQGRIPYPRPGTCPGGAFTPNMRTTKEFPDDVVTFIRNHPLMYNSIYPIHKRPLI 420 + HQLISYQGRIPYPRPGTCPGGAFTPNMRTTKEFPDDVVTFIRNHPLMYNSIYPIHKRPLI +Sbjct: 1643 HQLISYQGRIPYPRPGTCPGGAFTPNMRTTKEFPDDVVTFIRNHPLMYNSIYPIHKRPLI 1822 + +Query: 421 VRIGTDYKYTKIAVDRVNAADGRYHVLFLGTDRGTVQKVVVLPTNNSVSGELILEELEVF 480 + VRIGTDYKYTKIAVDRVNAADGRYHVLFLGTDRGTVQKVVVLPTNNSVSGELILEELEVF +Sbjct: 1823 VRIGTDYKYTKIAVDRVNAADGRYHVLFLGTDRGTVQKVVVLPTNNSVSGELILEELEVF 2002 + +Query: 481 KNHAPITTMKISSKKQQLYVSSNEGVSQVSLHRCHIYGTACADCCLARDPYCAWDGHSCS 540 + KNHAPITTMKISSKKQQLYVSSNEGVSQVSLHRCHIYGTACADCCLARDPYCAWDGHSCS +Sbjct: 2003 KNHAPITTMKISSKKQQLYVSSNEGVSQVSLHRCHIYGTACADCCLARDPYCAWDGHSCS 2182 + +Query: 541 RFYPTGKRRSRRQDVRHGNPLTQCRGFNLKAYRNAAEIVQYGVKNNTTFLECAPKSPQAS 600 + RFYPTGKRRSRRQDVRHGNPLTQCRGFNLKAYRNAAEIVQYGVKNNTTFLECAPKSPQAS +Sbjct: 2183 RFYPTGKRRSRRQDVRHGNPLTQCRGFNLKAYRNAAEIVQYGVKNNTTFLECAPKSPQAS 2362 + +Query: 601 IKWLLQKDKDRRKEVKLNERIIATSQGLLIRSVQGSDQGLYHCIATENSFKQTIAKINFK 660 + IKWLLQKDKDRRKEVKLNERIIATSQGLLIRSVQGSDQGLYHCIATENSFKQTIAKINFK +Sbjct: 2363 IKWLLQKDKDRRKEVKLNERIIATSQGLLIRSVQGSDQGLYHCIATENSFKQTIAKINFK 2542 + +Query: 661 VLDSEMVAVVTDKWSPWTWASSVRALPFHPKDIMGAFSHSEMQMINQYCKDTRQQHQQGD 720 + VLDSEMVAVVTDKWSPWTWASSVRALPFHPKDIMGAFSHSEMQMINQYCKDTRQQHQQGD +Sbjct: 2543 VLDSEMVAVVTDKWSPWTWASSVRALPFHPKDIMGAFSHSEMQMINQYCKDTRQQHQQGD 2722 + +Query: 721 ESQKMRGDYGKLKALINSRKSRNRRNQLPES 751 + ESQKMRGDYGKLKALINSRKSRNRRNQLPES +Sbjct: 2723 ESQKMRGDYGKLKALINSRKSRNRRNQLPES 2815 + + +>U38276 + Length = 3552 + + Score = 832 bits (2150), Expect = 0.0 + Identities = 396/728 (54%), Positives = 544/728 (74%), Gaps = 4/728 (0%) + Frame = +1 + +Query: 28 RVYLTFDELRETKTSEYFSLSHHPLDYRILLMDEDQDRIYVGSKDHILSLNINNISQEAL 87 + RV L+F EL+ T T+ +F+ + DYRILL DED DR+YVGSKD++LSL++++I++E L +Sbjct: 406 RVRLSFKELKATGTAHFFNFLLNTTDYRILLKDEDHDRMYVGSKDYVLSLDLHDINREPL 585 + +Query: 88 SVFWPASTIKVEECKMAGKDPTHGCGNFVRVIQTFNRTHLYVCGSGAFSPVCTYLNRGRR 147 + + W AS ++EEC ++GKD CGNFVR+IQ +NRTHLYVCG+GA++P+CTY+NRGRR +Sbjct: 586 IIHWAASPQRIEECVLSGKDVNGECGNFVRLIQPWNRTHLYVCGTGAYNPMCTYVNRGRR 765 + +Query: 148 SEDQVFMID-SKCESGKGRCSFNPNVNTVSVMINEELFSGMYIDFMGTDAAIFRSLTKRN 206 + ++D +F ++ + ESGKG+C ++P ++T S +INEEL++G+YIDFMGTDAAIFR+L K+ +Sbjct: 766 AQDYIFYLEPERLESGKGKCPYDPKLDTASALINEELYAGVYIDFMGTDAAIFRTLGKQT 945 + +Query: 207 AVRTDQHNSKWLSEPMFVDAHVIPDGTDPNDAKVYFFFKEKLTDNNRSTKQIHSMIARIC 266 + A+RTDQ+NS+WL++P F+ A +IPD + ND K+YFFF+E+ + +S +++ I RIC +Sbjct: 946 AMRTDQYNSRWLNDPSFIHAELIPDSAE-NDDKLYFFFRERSAEAPQSPA-VYARIGRIC 1119 + +Query: 267 PNDTGGLRSLVNKWTTFLKARLVCSVTDEDGPETHFDELEDVFLLETDNPRTTLVYGIFT 326 + ND GG LVNKW+TFLKARLVCSV EDG ETHFDEL+DVF+ +T + R ++Y +FT +Sbjct: 1120 LNDDGGHCCLVNKWSTFLKARLVCSVPGEDGIETHFDELQDVFVQQTQDVRNPVIYAVFT 1299 + +Query: 327 TSSSVFKGSAVCVYHLSDIQTVFNGPFAHKEGPNHQLISYQGRIPYPRPGTCPGGAFTPN 386 + +S SVF+GSAVCVY ++DI+ VFNGPFAHKEGPN+Q + + G++PYPRPGTCPGG FTP+ +Sbjct: 1300 SSGSVFRGSAVCVYSMADIRMVFNGPFAHKEGPNYQWMPFSGKMPYPRPGTCPGGTFTPS 1479 + +Query: 387 MRTTKEFPDDVVTFIRNHPLMYNSIYPIHKRPLIVRIGTDYKYTKIAVDRVNAADGRYHV 446 + M++TK++PD+V+ F+R+HPLMY ++YP+ +RPL+VR G Y+ T IAVD+V++ADGRY V +Sbjct: 1480 MKSTKDYPDEVINFMRSHPLMYQAVYPLQRRPLVVRTGAPYRLTTIAVDQVDSADGRYEV 1659 + +Query: 447 LFLGTDRGTVQKVVVLPTNNSVSGELILEELEVFKNHAPITTMKISSKKQQLYVSSNEGV 506 + LFLGTDRGTVQKV+VLP ++ EL+LEE+EVFK+ AP+ TM ISSK+QQLYV+S GV +Sbjct: 1660 LFLGTDRGTVQKVIVLPKDDQEMEELMLEEVEVFKDPAPVKTMTISSKRQQLYVASAVGV 1839 + +Query: 507 SQVSLHRCHIYGTACADCCLARDPYCAWDGHSCSRFYPTGKRRSRRQDVRHGNPLTQCRG 566 + + +SLHRC YG ACADCCLARDPYCAWDG +CSR+ + KRRSRRQDVRHGNP+ QCRG +Sbjct: 1840 THLSLHRCQAYGAACADCCLARDPYCAWDGQACSRYTASSKRRSRRQDVRHGNPIRQCRG 2019 + +Query: 567 FNLKAYRNAAEIVQYGVKNNTTFLECAPKSPQASIKWLLQKDK-DRRKEVKLNERIIATS 625 + FN A +NA E VQYGV + FLEC P+SPQA++KWL Q+D DRR+E++ +R + T +Sbjct: 2020 FNSNANKNAVESVQYGVAGSAAFLECQPRSPQATVKWLFQRDPGDRRREIRAEDRFLRTE 2199 + +Query: 626 QGLLIRSVQGSDQGLYHCIATENSFKQTIAKINFKVLDSEMVAVVTDKWSPWTWASSVRA 685 + QGLL+R++Q SD+GLY C ATEN+FK + ++ VL + V + A +Sbjct: 2200 QGLLLRALQLSDRGLYSCTATENNFKHVVTRVQLHVLGRDAVHAALFPPLSMSAPPPPGA 2379 + +Query: 686 LPFHP--KDIMGAFSHSEMQMINQYCKDTRQQHQQGDESQKMRGDYGKLKALINSRKSRN 743 + P P +++ + E+ +I+QYC+ + S + + + +K RN +Sbjct: 2380 GPPTPPYQELAQLLAQPEVGLIHQYCQG---YWRHVPPSPREAPGAPRSPEPQDQKKPRN 2550 + +Query: 744 RRNQLPES 751 + RR+ P++ +Sbjct: 2551 RRHHPPDT 2574 + + +>BC042914 + Length = 3540 + + Score = 821 bits (2121), Expect = 0.0 + Identities = 397/759 (52%), Positives = 544/759 (71%), Gaps = 35/759 (4%) + Frame = +1 + +Query: 28 RVYLTFDELRETKTSEYFSLSHHPLDYRILLMDEDQDRIYVGSKDHILSLNINNISQEAL 87 + RV L+F EL+ T T+ +F+ + DYRILL DED DR+YVGSKD++LSL++++I++E L +Sbjct: 289 RVRLSFKELKATGTAHFFNFLLNTTDYRILLKDEDHDRMYVGSKDYVLSLDLHDINREPL 468 + +Query: 88 SVFWPASTIKVEECKMAGKDPTHGCGNFVRVIQTFNRTHLYVCGSGAFSPVCTYLNRGRR 147 + + W AS ++EEC ++GKD CGNFVR+IQ +NRTHLYVCG+GA++P+CTY+NRGRR +Sbjct: 469 IIHWAASPQRIEECVLSGKDVNGECGNFVRLIQPWNRTHLYVCGTGAYNPMCTYVNRGRR 648 + +Query: 148 SE-------------------------------DQVFMID-SKCESGKGRCSFNPNVNTV 175 + ++ D +F ++ + ESGKG+C ++P ++T +Sbjct: 649 AQATPWTQTQAVRGRGSRATDGALRPMPTAPRQDYIFYLEPERLESGKGKCPYDPKLDTA 828 + +Query: 176 SVMINEELFSGMYIDFMGTDAAIFRSLTKRNAVRTDQHNSKWLSEPMFVDAHVIPDGTDP 235 + S +INEEL++G+YIDFMGTDAAIFR+L K+ A+RTDQ+NS+WL++P F+ A +IPD + +Sbjct: 829 SALINEELYAGVYIDFMGTDAAIFRTLGKQTAMRTDQYNSRWLNDPSFIHAELIPDSAER 1008 + +Query: 236 NDAKVYFFFKEKLTDNNRSTKQIHSMIARICPNDTGGLRSLVNKWTTFLKARLVCSVTDE 295 + ND K+YFFF+E+ + +S +++ I RIC ND GG LVNKW+TFLKARLVCSV E +Sbjct: 1009 NDDKLYFFFRERSAEAPQSPA-VYARIGRICLNDDGGHCCLVNKWSTFLKARLVCSVPGE 1185 + +Query: 296 DGPETHFDELEDVFLLETDNPRTTLVYGIFTTSSSVFKGSAVCVYHLSDIQTVFNGPFAH 355 + DG ETHFDEL+DVF+ +T + R ++Y +FT+S SVF+GSAVCVY ++DI+ VFNGPFAH +Sbjct: 1186 DGIETHFDELQDVFVQQTQDVRNPVIYAVFTSSGSVFRGSAVCVYSMADIRMVFNGPFAH 1365 + +Query: 356 KEGPNHQLISYQGRIPYPRPGTCPGGAFTPNMRTTKEFPDDVVTFIRNHPLMYNSIYPIH 415 + KEGPN+Q + + G++PYPRPGTCPGG FTP+M++TK++PD+V+ F+R+HPLMY ++YP+ +Sbjct: 1366 KEGPNYQWMPFSGKMPYPRPGTCPGGTFTPSMKSTKDYPDEVINFMRSHPLMYQAVYPLQ 1545 + +Query: 416 KRPLIVRIGTDYKYTKIAVDRVNAADGRYHVLFLGTDRGTVQKVVVLPTNNSVSGELILE 475 + +RPL+VR G Y+ T IAVD+V+AADGRY VLFLGTDRGTVQKV+VLP ++ EL+LE +Sbjct: 1546 RRPLVVRTGAPYRLTTIAVDQVDAADGRYEVLFLGTDRGTVQKVIVLPKDDQEMEELMLE 1725 + +Query: 476 ELEVFKNHAPITTMKISSKKQQLYVSSNEGVSQVSLHRCHIYGTACADCCLARDPYCAWD 535 + E+EVFK+ AP+ TM ISSK+QQLYV+S GV+ +SLHRC YG ACADCCLARDPYCAWD +Sbjct: 1726 EVEVFKDPAPVKTMTISSKRQQLYVASAVGVTHLSLHRCQAYGAACADCCLARDPYCAWD 1905 + +Query: 536 GHSCSRFYPTGKRRSRRQDVRHGNPLTQCRGFNLKAYRNAAEIVQYGVKNNTTFLECAPK 595 + G +CSR+ + KRRSRRQDVRHGNP+ QCRGFN A +NA E VQYGV + FLEC P+ +Sbjct: 1906 GQACSRYTASSKRRSRRQDVRHGNPIRQCRGFNSNANKNAVESVQYGVAGSAAFLECQPR 2085 + +Query: 596 SPQASIKWLLQKDK-DRRKEVKLNERIIATSQGLLIRSVQGSDQGLYHCIATENSFKQTI 654 + SPQA++KWL Q+D DRR+E++ +R + T QGLL+R++Q SD+GLY C ATEN+FK + +Sbjct: 2086 SPQATVKWLFQRDPGDRRREIRAEDRFLRTEQGLLLRALQLSDRGLYSCTATENNFKHVV 2265 + +Query: 655 AKINFKVLDSEMVAVVTDKWSPWTWASSVRALPFHP--KDIMGAFSHSEMQMINQYCKDT 712 + ++ VL + V + A P P +++ + E+ +I+QYC+ +Sbjct: 2266 TRVQLHVLGRDAVHAALFPPLSMSAPPPPGAGPPTPPYQELAQLLAQPEVGLIHQYCQG- 2442 + +Query: 713 RQQHQQGDESQKMRGDYGKLKALINSRKSRNRRNQLPES 751 + + S + + + +K RNRR+ P++ +Sbjct: 2443 --YWRHVPPSPREAPGAPRSPEPQDQKKPRNRRHHPPDT 2553 + + +>L26081 + Length = 2530 + + Score = 708 bits (1827), Expect = 0.0 + Identities = 339/757 (44%), Positives = 508/757 (67%), Gaps = 15/757 (1%) + Frame = +1 + +Query: 4 RTICVLVGVFICSIC-VKGSSQPQARVYLTFDELRETKTSEYFSLSHHPLDYRILLMDED 62 + R +C+ GV + + + R+ L++ E+ E+ F+ + Y L+DE+ +Sbjct: 31 RIVCLFWGVLLTARANYQNGKNNVPRLKLSYKEMLESNNVITFNGLANSSSYHTFLLDEE 210 + +Query: 63 QDRIYVGSKDHILSLNINNISQEALSVFWPASTIKVEECKMAGKDPTHGCGNFVRVIQTF 122 + + R+YVG+KDHI S ++ NI ++ + WP S + +ECK AGKD C NF++V++ + +Sbjct: 211 RSRLYVGAKDHIFSFDLVNI-KDFQKIVWPVSYTRRDECKWAGKDILKECANFIKVLKAY 387 + +Query: 123 NRTHLYVCGSGAFSPVCTYLNRGRRSEDQVFMID-SKCESGKGRCSFNPNVNTVSVMINE 181 + N+THLY CG+GAF P+CTY+ G ED +F ++ S E+G+G+ ++P + T S++I+ +Sbjct: 388 NQTHLYACGTGAFHPICTYIEIGHHPEDNIFKLENSHFENGRGKSPYDPKLLTASLLIDG 567 + +Query: 182 ELFSGMYIDFMGTDAAIFRSLTKRNAVRTDQHNSKWLSEPMFVDAHVIPDGTDPNDAKVY 241 + EL+SG DFMG D AIFR+L + +RT+QH+S+WL++P F+ AH+I + +P D KVY +Sbjct: 568 ELYSGTAADFMGRDFAIFRTLGHHHPIRTEQHDSRWLNDPKFISAHLISESDNPEDDKVY 747 + +Query: 242 FFFKEKLTDNNRSTKQIHSMIARICPNDTGGLRSLVNKWTTFLKARLVCSVTDEDGPETH 301 + FFF+E D S K H+ I +IC ND GG RSLVNKWTTFLKARL+CSV +G +TH +Sbjct: 748 FFFRENAIDGEHSGKATHARIGQICKNDFGGHRSLVNKWTTFLKARLICSVPGPNGIDTH 927 + +Query: 302 FDELEDVFLLETDNPRTTLVYGIFTTSSSVFKGSAVCVYHLSDIQTVFNGPFAHKEGPNH 361 + FDEL+DVFL+ +P+ +VYG+FTTSS++FKGSAVC+Y +SD++ VF GP+AH++GPN+ +Sbjct: 928 FDELQDVFLMNFKDPKNPVVYGVFTTSSNIFKGSAVCMYSMSDVRRVFLGPYAHRDGPNY 1107 + +Query: 362 QLISYQGRIPYPRPGTCPGGAFTPNMRTTKEFPDDVVTFIRNHPLMYNSIYPIHKRPLIV 421 + Q + YQGR+PYPRPGTCP F +TK+ PDDV+TF R+HP MYN ++P++ RP+++ +Sbjct: 1108QWVPYQGRVPYPRPGTCPSKTF-GGFDSTKDLPDDVITFARSHPAMYNPVFPMNNRPIVI 1284 + +Query: 422 RIGTDYKYTKIAVDRVNAADGRYHVLFLGTDRGTVQKVVVLPTNNSVS-GELILEELEVF 480 + + +Y++T+I VDRV+A DG+Y V+F+GTD GTV KVV +P E++LEE+ VF +Sbjct: 1285KTDVNYQFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSIPKETWYDLEEVLLEEMTVF 1464 + +Query: 481 KNHAPITTMKISSKKQQLYVSSNEGVSQVSLHRCHIYGTACADCCLARDPYCAWDGHSCS 540 + + I+ M++S+K+QQLY+ S GV+Q+ LHRC IYG ACA+CCLARDPYCAWDG +CS +Sbjct: 1465REPTAISAMELSTKQQQLYIGSTAGVAQLPLHRCDIYGKACAECCLARDPYCAWDGSACS 1644 + +Query: 541 RFYPTGKRRSRRQDVRHGNPLTQCRGFNLKAY--RNAAEIVQYGVKNNTTFLECAPKSPQ 598 + R++PT KRR+RRQD+R+G+PLT C + + + E + YGV+N++TFLEC+PKS + +Sbjct: 1645RYFPTAKRRTRRQDIRNGDPLTHCSDLHHDNHHGHSPEERIIYGVENSSTFLECSPKSQR 1824 + +Query: 599 ASIKWLLQ-KDKDRRKEVKLNERIIATSQGLLIRSVQGSDQGLYHCIATENSFKQTIAKI 657 + A + W Q ++++R++E+++++ II T QGLL+RS+Q D G Y C A E+ F QT+ K+ +Sbjct: 1825ALVYWQFQRRNEERKEEIRVDDHIIRTDQGLLLRSLQQKDSGNYLCHAVEHGFIQTLLKV 2004 + +Query: 658 NFKVLDSEMVAVVTDKWSPWTWA-------SSVRALPFHPKDIMGAFSHSEMQMINQYCK 710 + +V+D+E + + K + S + +D M +H + ++++C+ +Sbjct: 2005TLEVIDTEHLEELLHKDDDGDGSKTKEMSNSMTPSQKVWYRDFMQLINHPNLNTMDEFCE 2184 + +Query: 711 DT--RQQHQQGDESQKMRGDYGKLKALINSRKSRNRR 745 + R + Q+ G+ K K L ++K RNRR +Sbjct: 2185QVWKRDRKQRRQRPGHTPGNSNKWKHLQENKKGRNRR 2295 + + +>AB002329 + Length = 6474 + + Score = 648 bits (1671), Expect = 0.0 + Identities = 322/701 (45%), Positives = 453/701 (64%), Gaps = 18/701 (2%) + Frame = +2 + +Query: 28 RVYLTFDELRETKTSEYFSLSHHPLDYRILLMDEDQDRIYVGSKDHILSLNINNISQEAL 87 + R+ L+ EL + F LD +L+DE Q+R++VG +D + SL++ IS +Sbjct: 560 RLRLSHKELLNLNRTSIFHSPFGFLDLHTMLLDEYQERLFVGGRDLVYSLSLERISDGYK 739 + +Query: 88 SVFWPASTIKVEECKMAGKDPTHGCGNFVRVIQTFNRTHLYVCGSGAFSPVCTYLNRGRR 147 + + WP++ +K+EEC M GKD C N+VRV+ +NRTHL CG+GAF PVC ++ G +Sbjct: 740 EIHWPSTALKMEECIMKGKDAGE-CANYVRVLHHYNRTHLLTCGTGAFDPVCAFIRVGYH 916 + +Query: 148 SEDQVFMIDS-KCESGKGRCSFNPNVNTVSVMINEELFSGMYIDFMGTDAAIFRSLTKRN 206 + ED +F ++S + E G+GRC F+P+ + +S +I ELF+G+Y D+ DAAIFRS+ + +Sbjct: 917 LEDPLFHLESPRSERGRGRCPFDPSSSFISTLIGSELFAGLYSDYWSRDAAIFRSMGRLA 1096 + +Query: 207 AVRTDQHNSKWLSEPMFVDAHVIPDGTDPNDAKVYFFFKEKLTDNNRSTKQIHSMIARIC 266 + +RT+ + + L EP FV +++IPD D +D KVYFFF EK + + I++ + R+C +Sbjct: 1097 HIRTEHDDERLLKEPKFVGSYMIPDNEDRDDNKVYFFFTEKALEAENNAHAIYTRVGRLC 1276 + +Query: 267 PNDTGGLRSLVNKWTTFLKARLVCSVTDEDGPETHFDELEDVFLLETDNPRTTLVYGIFT 326 + ND GG R LVNKW+TFLKARLVCSV +G +T+FDELEDVFLL T + + +++G+F +Sbjct: 1277 VNDVGGQRILVNKWSTFLKARLVCSVPGMNGIDTYFDELEDVFLLPTRDHKNPVIFGLFN 1456 + +Query: 327 TSSSVFKGSAVCVYHLSDIQTVFNGPFAHKEGPNHQLISYQGRIPYPRPGTCPGGAFTPN 386 + T+S++F+G A+CVYH+S I+ FNGP+AHKEGP + Y+G++PYPRPG+C +Sbjct: 1457 TTSNIFRGHAICVYHMSSIRAAFNGPYAHKEGPEYHWSVYEGKVPYPRPGSCASKVNGGR 1636 + +Query: 387 MRTTKEFPDDVVTFIRNHPLMYNSIYPIHKRPLIVRIGTDYKYTKIAVDRVNAADGRYHV 446 + TTK++PDD + F R+HPLMY +I P HK+P++V+ Y +IAVDRV A DG+Y V +Sbjct: 1637 YGTTKDYPDDAIRFARSHPLMYQAIKPAHKKPILVKTDGKYNLKQIAVDRVEAEDGQYDV 1816 + +Query: 447 LFLGTDRGTVQKVVVLPTNNSVS-GELILEELEVFKNHAPITTMKISSKKQQLYVSSNEG 505 + LF+GTD G V KV+ + S E+ILEEL++FK+ PI +M+ISSK+QQLY+ S +Sbjct: 1817 LFIGTDNGIVLKVITIYNQEMESMEEVILEELQIFKDPVPIISMEISSKRQQLYIGSASA 1996 + +Query: 506 VSQVSLHRCHIYGTACADCCLARDPYCAWDGHSCSRFYPTG---KRRSRRQDVRHGNPLT 562 + V+QV H C +YG+ACADCCLARDPYCAWDG SCSR+YPTG KRR RRQDVRHGN +Sbjct: 1997 VAQVRFHHCDMYGSACADCCLARDPYCAWDGISCSRYYPTGTHAKRRFRRQDVRHGNAAQ 2176 + +Query: 563 QCRG--FNLKAYRNAAEIVQYGVKNNTTFLECAPKSPQASIKWLLQKDKDRRK-EVKLNE 619 + QC G F A E + YG++NN+T LEC P+S QA + W +QK ++ RK EVK ++ +Sbjct: 2177 QCFGQQFVGDALDKTEEHLAYGIENNSTLLECTPRSLQAKVIWFVQKGRETRKEEVKTDD 2356 + +Query: 620 RIIATSQGLLIRSVQGSDQGLYHCIATENSFKQTIAKINFKVLDSEMVAVVTDKWS---- 675 + R++ GLL + SD G Y C E+SF T+ KI +V++ E V + +K +Sbjct: 2357 RVVKMDLGLLFLRLHKSDAGTYFCQTVEHSFVHTVRKITLEVVEEEKVEDMFNKDDEEDR 2536 + +Query: 676 ------PWTWASSVRALPFHPKDIMGAFSHSEMQMINQYCK 710 + P + S A P++ K+ + +S Q + +YC+ +Sbjct: 2537 HHRMPCPAQSSISQGAKPWY-KEFLQLIGYSNFQRVEEYCE 2656 + + +>U28369 + Length = 2919 + + Score = 640 bits (1651), Expect = 0.0 + Identities = 318/649 (48%), Positives = 444/649 (68%), Gaps = 5/649 (0%) + Frame = +2 + +Query: 21 GSSQPQA-RVYLTFDELRETKTSEYFSLSHHPLDYRILLMDEDQDRIYVGSKDHILSLNI 79 + GS+ P R+ L+F EL+ + FSL Y+ LL+DE++ R++VG+++H+ SLN+ +Sbjct: 299 GSAAPSPPRLRLSFQELQAWHGLQTFSLER-TCCYQALLVDEERGRLFVGAENHVASLNL 475 + +Query: 80 NNISQEALSVFWPASTIKVEECKMAGKDPTHGCGNFVRVIQTFNRTHLYVCGSGAFSPVC 139 + +NIS+ A + WPA EEC AGKD C NFV+++ +NRTHL CG+GAF P C +Sbjct: 476 DNISKRAKKLAWPAPVEWREECNWAGKDIGTECMNFVKLLHAYNRTHLLACGTGAFHPTC 655 + +Query: 140 TYLNRGRRSEDQVFMID-SKCESGKGRCSFNPNVNTVSVMINEELFSGMYIDFMGTDAAI 198 + ++ G R+E+ V +D + E GKG+ ++P SV++ EEL+SG+ D MG D I +Sbjct: 656 AFVEVGHRAEEPVLRLDPGRIEDGKGKSPYDPRHRAASVLVGEELYSGVAADLMGRDFTI 835 + +Query: 199 FRSLTKRNAVRTDQHNSKWLSEPMFVDAHVIPDGTDPNDAKVYFFFKEKLTDNNRSTKQI 258 + FRSL +R ++RT+ H+S+WL+EP FV IP+ +P+D K+YFFF+E + + ++ +Sbjct: 836 FRSLGQRPSLRTEPHDSRWLNEPKFVKVFWIPESENPDDDKIYFFFRETAVEAAPALGRL 1015 + +Query: 259 H-SMIARICPNDTGGLRSLVNKWTTFLKARLVCSVTDEDGPETHFDELEDVFLLETDNPR 317 + S + +IC ND GG RSLVNKWTTFLKARLVCSV +G +THFD+L+DVFLL + + R +Sbjct: 1016SVSRVGQICRNDVGGQRSLVNKWTTFLKARLVCSVPGVEG-DTHFDQLQDVFLLSSRDHR 1192 + +Query: 318 TTLVYGIFTTSSSVFKGSAVCVYHLSDIQTVFNGPFAHKEGPNHQLISYQGRIPYPRPGT 377 + T L+Y +F+TSSS+F+GSAVCVY ++D++ F GPFAHKEGP HQ +SYQGR+PYPRPG +Sbjct: 1193TPLLYAVFSTSSSIFQGSAVCVYSMNDVRRAFLGPFAHKEGPMHQWVSYQGRVPYPRPGM 1372 + +Query: 378 CPGGAFTPNMRTTKEFPDDVVTFIRNHPLMYNSIYPIHKRPLIVRIGTDYKYTKIAVDRV 437 + CP F +TK+FPDDV+ F RNHPLMYNS+ P RPL +++G +Y +T+IA DRV +Sbjct: 1373CPSKTFG-TFSSTKDFPDDVIQFARNHPLMYNSVLPTGGRPLFLQVGANYTFTQIAADRV 1549 + +Query: 438 NAADGRYHVLFLGTDRGTVQKVVVLPTNNSVSGE-LILEELEVFKNHAPITTMKISSKKQ 496 + AADG Y VLF+GTD GTV KV+ +P + S E L+LEEL VF++ A +T+M+ISSK+ +Sbjct: 1550AAADGHYDVLFIGTDVGTVLKVISVPKGSRPSAEGLLLEELHVFEDSAAVTSMQISSKRH 1729 + +Query: 497 QLYVSSNEGVSQVSLHRCHIYGTACADCCLARDPYCAWDGHSCSRFYPTGKRRSRRQDVR 556 + QLYV+S V+Q++LHRC +G C +CCLARDPYCAWDG +C+RF P+ KRR RRQDVR +Sbjct: 1730QLYVASRSAVAQIALHRCAAHGRVCTECCLARDPYCAWDGVACTRFQPSAKRRFRRQDVR 1909 + +Query: 557 HGNPLTQCRGFNLKAYRNAAEIVQYGVKNNTTFLECAPKSPQASIKWLLQK-DKDRRKEV 615 + +G+P T C G + + E +GV+ ++ FLEC P+S QA ++W Q+ +V +Sbjct: 1910NGDPSTLCSGDSSRP--ALLEHKVFGVEGSSAFLECEPRSLQARVEWTFQRAGVTAHTQV 2083 + +Query: 616 KLNERIIATSQGLLIRSVQGSDQGLYHCIATENSFKQTIAKINFKVLDS 664 + ER T++GLL+R ++ D G+Y C A E F Q + +++ VL + +Sbjct: 2084LAEERTERTARGLLLRRLRRRDSGVYLCAAVEQGFTQPLRRLSLHVLSA 2230 + + +>BC024220 + Length = 2800 + + Score = 634 bits (1635), Expect = 0.0 + Identities = 317/649 (48%), Positives = 443/649 (68%), Gaps = 5/649 (0%) + Frame = +1 + +Query: 21 GSSQPQA-RVYLTFDELRETKTSEYFSLSHHPLDYRILLMDEDQDRIYVGSKDHILSLNI 79 + GS+ P R+ L+F EL+ + FSL Y+ LL+DE++ R++VG+++H+ SLN+ +Sbjct: 136 GSAAPSPPRLRLSFQELQAWHGLQTFSLER-TCCYQALLVDEERGRLFVGAENHVASLNL 312 + +Query: 80 NNISQEALSVFWPASTIKVEECKMAGKDPTHGCGNFVRVIQTFNRTHLYVCGSGAFSPVC 139 + +NIS+ A + WPA EEC AGKD C NFV+++ +NRTHL CG+GAF P C +Sbjct: 313 DNISKRAKKLAWPAPVEWREECNWAGKDIGTECMNFVKLLHAYNRTHLLACGTGAFHPTC 492 + +Query: 140 TYLNRGRRSEDQVFMID-SKCESGKGRCSFNPNVNTVSVMINEELFSGMYIDFMGTDAAI 198 + ++ G R+E+ V +D + E GKG+ ++P SV++ EEL+SG+ D MG D I +Sbjct: 493 AFVEVGHRAEEPVLRLDPGRIEDGKGKSPYDPRHRAASVLVGEELYSGVAADLMGRDFTI 672 + +Query: 199 FRSLTKRNAVRTDQHNSKWLSEPMFVDAHVIPDGTDPNDAKVYFFFKEKLTDNNRSTKQI 258 + FRSL +R ++RT+ H+S+WL+EP FV IP+ +P+D K+YFFF+E + + ++ +Sbjct: 673 FRSLGQRPSLRTEPHDSRWLNEPKFVKVFWIPESENPDDDKIYFFFRETAVEAAPALGRL 852 + +Query: 259 H-SMIARICPNDTGGLRSLVNKWTTFLKARLVCSVTDEDGPETHFDELEDVFLLETDNPR 317 + S + +IC ND GG RSLVNKWTTFLKARLVCSV +G +THFD+L+DVFLL + + R +Sbjct: 853 SVSRVGQICRNDVGGQRSLVNKWTTFLKARLVCSVPGVEG-DTHFDQLQDVFLLSSRDHR 1029 + +Query: 318 TTLVYGIFTTSSSVFKGSAVCVYHLSDIQTVFNGPFAHKEGPNHQLISYQGRIPYPRPGT 377 + T L+Y +F+TSS +F+GSAVCVY ++D++ F GPFAHKEGP HQ +SYQGR+PYPRPG +Sbjct: 1030TPLLYAVFSTSS-IFQGSAVCVYSMNDVRRAFLGPFAHKEGPMHQWVSYQGRVPYPRPGM 1206 + +Query: 378 CPGGAFTPNMRTTKEFPDDVVTFIRNHPLMYNSIYPIHKRPLIVRIGTDYKYTKIAVDRV 437 + CP F +TK+FPDDV+ F RNHPLMYNS+ P RPL +++G +Y +T+IA DRV +Sbjct: 1207CPSKTFG-TFSSTKDFPDDVIQFARNHPLMYNSVLPTGGRPLFLQVGANYTFTQIAADRV 1383 + +Query: 438 NAADGRYHVLFLGTDRGTVQKVVVLPTNNSVSGE-LILEELEVFKNHAPITTMKISSKKQ 496 + AADG Y VLF+GTD GTV KV+ +P + S E L+LEEL VF++ A +T+M+ISSK+ +Sbjct: 1384AAADGHYDVLFIGTDVGTVLKVISVPKGSRPSAEGLLLEELHVFEDSAAVTSMQISSKRH 1563 + +Query: 497 QLYVSSNEGVSQVSLHRCHIYGTACADCCLARDPYCAWDGHSCSRFYPTGKRRSRRQDVR 556 + QLYV+S V+Q++LHRC +G C +CCLARDPYCAWDG +C+RF P+ KRR RRQDVR +Sbjct: 1564QLYVASRSAVAQIALHRCAAHGRVCTECCLARDPYCAWDGVACTRFQPSAKRRFRRQDVR 1743 + +Query: 557 HGNPLTQCRGFNLKAYRNAAEIVQYGVKNNTTFLECAPKSPQASIKWLLQK-DKDRRKEV 615 + +G+P T C G + + E +GV+ ++ FLEC P+S QA ++W Q+ +V +Sbjct: 1744NGDPSTLCSGDSSRP--ALLEHKVFGVEGSSAFLECEPRSLQARVEWTFQRAGVTAHTQV 1917 + +Query: 616 KLNERIIATSQGLLIRSVQGSDQGLYHCIATENSFKQTIAKINFKVLDS 664 + ER T++GLL+R ++ D G+Y C A E F Q + +++ VL + +Sbjct: 1918LAEERTERTARGLLLRRLRRRDSGVYLCAAVEQGFTQPLRRLSLHVLSA 2064 + + +>AB029496 + Length = 4700 + + Score = 584 bits (1505), Expect = e-166 + Identities = 308/671 (45%), Positives = 418/671 (62%), Gaps = 14/671 (2%) + Frame = +1 + +Query: 6 ICVLVGVFICSICVKGSSQPQA-----RVYLTFDELRETKTSEYFSLSHHPLDYRILLMD 60 + IC L+G + GSS P R+ L++ +L S F L+ + + +D +Sbjct: 22 ICWLLGGLLLH---GGSSGPSPGPSVPRLRLSYRDLLSANRSAIFLGPQGSLNLQAMYLD 192 + +Query: 61 EDQDRIYVGSKDHILSLNINNISQEALSVFWPASTIKVEECKMAGKDPTHGCGNFVRVIQ 120 + E +DR+++G D + SL ++ + V WP + EEC G+DP C NFVRV+Q +Sbjct: 193 EYRDRLFLGGLDALYSLRLDQAWPDPREVLWPPQPGQREECVRKGRDPLTECANFVRVLQ 372 + +Query: 121 TFNRTHLYVCGSGAFSPVCTYLNRGRRSEDQVFMIDSKCESGKGRCSFNPNVNTVSVMIN 180 + NRTHL CG+GAF P C + G R E + + ESG+GRC P+ S I+ +Sbjct: 373 PHNRTHLLACGTGAFQPTCALITVGHRGEHVLHLEPGSVESGRGRCPHEPSRPFASTFID 552 + +Query: 181 EELFSGMYIDFMGTDAAIFRSLTKRNAVRTDQHNSKWLSEPMFVDAHVIPDGTDPNDAKV 240 + EL++G+ DF+G +A IFRS R A+R+D S L +P FV A IP+ +D ++ KV +Sbjct: 553 GELYTGLTADFLGREAMIFRSGGPRPALRSDSDQSL-LHDPRFVMAARIPENSDQDNDKV 729 + +Query: 241 YFFFKEKLTDNNRSTKQIH-SMIARICPNDTGGLRSLVNKWTTFLKARLVCSVTDEDGPE 299 + YFFF E + + + + S + R+C ND GG R LVNKW+TFLKARLVCSV G E +Sbjct: 730 YFFFSETVPSPDGGSNHVTVSRVGRVCVNDAGGQRVLVNKWSTFLKARLVCSVPGPGGAE 909 + +Query: 300 THFDELEDVFLLETDNPRTTLVYGIFTTSSSVFKGSAVCVYHLSDIQTVFNGPFAHKEGP 359 + THFD+LEDVFLL ++ VY +F+T S+VF+G AVCVYH++DI VFNGPFAH++GP +Sbjct: 910 THFDQLEDVFLLWPKAGKSLEVYALFSTVSAVFQGFAVCVYHMADIWEVFNGPFAHRDGP 1089 + +Query: 360 NHQLISYQGRIPYPRPGTCPGGAFTPNMR---TTKEFPDDVVTFIRNHPLMYNSIYPIHK 416 + HQ Y G++P+PRPG CP R +TK++PD+V+ F R HPLM+ + P H +Sbjct: 1090QHQWGPYGGKVPFPRPGVCPSKMTAQPGRPFGSTKDYPDEVLQFARAHPLMFWPVRPRHG 1269 + +Query: 417 RPLIVRIGTDYKYTKIAVDRVNAADGRYHVLFLGTDRGTVQKVVVLPTNNSVS-GELILE 475 + RP++V+ + +I VDRV A DG Y V+FLGTD G+V KV+ L S E++LE +Sbjct: 1270RPVLVKTHLAQQLHQIVVDRVEAEDGTYDVIFLGTDSGSVLKVIALQAGGSAEPEEVVLE 1449 + +Query: 476 ELEVFKNHAPITTMKISSKKQQLYVSSNEGVSQVSLHRCHIYGTACADCCLARDPYCAWD 535 + EL+VFK PIT M+IS K+Q LYV S GV+Q+ LH+C YGTACA+CCLARDPYCAWD +Sbjct: 1450ELQVFKVPTPITEMEISVKRQMLYVGSRLGVAQLRLHQCETYGTACAECCLARDPYCAWD 1629 + +Query: 536 GHSCSRFYPT-GKRRSRRQDVRHGNPLTQCRGFNL--KAYRNAAEIVQYGVKNNTTFLEC 592 + G SC+ + P+ GKRR RRQD+RHGNP QC G + +A A + YG ++N+TFLEC +Sbjct: 1630GASCTHYRPSLGKRRFRRQDIRHGNPALQCLGQSQEEEAVGLVAATMVYGTEHNSTFLEC 1809 + +Query: 593 APKSPQASIKWLLQKDKDR-RKEVKLNERIIATSQGLLIRSVQGSDQGLYHCIATENSFK 651 + PKSPQA+++WLLQ+ D +VK +ER++ T +GLL R + D G Y C E+ F +Sbjct: 1810LPKSPQAAVRWLLQRPGDEGPDQVKTDERVLHTERGLLFRRLSRFDAGTYTCTTLEHGFS 1989 + +Query: 652 QTIAKINFKVL 662 + QT+ ++ V+ +Sbjct: 1990QTVVRLALVVI 2022 + + +>BC009113 + Length = 2765 + + Score = 574 bits (1480), Expect = e-163 + Identities = 280/557 (50%), Positives = 387/557 (69%), Gaps = 4/557 (0%) + Frame = +3 + +Query: 112 CGNFVRVIQTFNRTHLYVCGSGAFSPVCTYLNRGRRSEDQVFMID-SKCESGKGRCSFNP 170 + C NFV+++ +NRTHL CG+GAF P C ++ G R+E+ V +D + E GKG+ ++P +Sbjct: 336 CMNFVKLLHAYNRTHLLACGTGAFHPTCAFVEVGHRAEEPVLRLDPGRIEDGKGKSPYDP 515 + +Query: 171 NVNTVSVMINEELFSGMYIDFMGTDAAIFRSLTKRNAVRTDQHNSKWLSEPMFVDAHVIP 230 + SV++ EEL+SG+ D MG D IFRSL +R ++RT+ H+S+WL+EP FV IP +Sbjct: 516 RHRAASVLVGEELYSGVAADLMGRDFTIFRSLGQRPSLRTEPHDSRWLNEPKFVKVFWIP 695 + +Query: 231 DGTDPNDAKVYFFFKEKLTDNNRSTKQIH-SMIARICPNDTGGLRSLVNKWTTFLKARLV 289 + + +P+D K+YFFF+E + + ++ S + +IC ND GG RSLVNKWTTFLKARLV +Sbjct: 696 ESENPDDDKIYFFFRETAVEAAPALGRLSVSRVGQICRNDVGGQRSLVNKWTTFLKARLV 875 + +Query: 290 CSVTDEDGPETHFDELEDVFLLETDNPRTTLVYGIFTTSSSVFKGSAVCVYHLSDIQTVF 349 + CSV +G +THFD+L+DVFLL + + RT L+Y +F+TSS +F+GSAVCVY ++D++ F +Sbjct: 876 CSVPGVEG-DTHFDQLQDVFLLSSRDHRTPLLYAVFSTSS-IFQGSAVCVYSMNDVRRAF 1049 + +Query: 350 NGPFAHKEGPNHQLISYQGRIPYPRPGTCPGGAFTPNMRTTKEFPDDVVTFIRNHPLMYN 409 + GPFAHKEGP HQ +SYQGR+PYPRPG CP F +TK+FPDDV+ F RNHPLMYN +Sbjct: 1050LGPFAHKEGPMHQWVSYQGRVPYPRPGMCPSKTFG-TFSSTKDFPDDVIQFARNHPLMYN 1226 + +Query: 410 SIYPIHKRPLIVRIGTDYKYTKIAVDRVNAADGRYHVLFLGTDRGTVQKVVVLPTNNSVS 469 + S+ P RPL +++G +Y +T+IA DRV AADG Y VLF+GTD GTV KV+ +P + S +Sbjct: 1227SVLPTGGRPLFLQVGANYTFTQIAADRVAAADGHYDVLFIGTDVGTVLKVISVPKGSRPS 1406 + +Query: 470 GE-LILEELEVFKNHAPITTMKISSKKQQLYVSSNEGVSQVSLHRCHIYGTACADCCLAR 528 + E L+LEEL VF++ A +T+M+ISSK+ QLYV+S V+Q++LHRC +G C +CCLAR +Sbjct: 1407AEGLLLEELHVFEDSAAVTSMQISSKRHQLYVASRSAVAQIALHRCAAHGRVCTECCLAR 1586 + +Query: 529 DPYCAWDGHSCSRFYPTGKRRSRRQDVRHGNPLTQCRGFNLKAYRNAAEIVQYGVKNNTT 588 + DPYCAWDG +C+RF P+ KRR RRQDVR+G+P T C G + + E +GV+ ++ +Sbjct: 1587DPYCAWDGVACTRFQPSAKRRFRRQDVRNGDPSTLCSGDSSRP--ALLEHKVFGVEGSSA 1760 + +Query: 589 FLECAPKSPQASIKWLLQK-DKDRRKEVKLNERIIATSQGLLIRSVQGSDQGLYHCIATE 647 + FLEC P+S QA ++W Q+ +V ER T++GLL+R ++ D G+Y C A E +Sbjct: 1761FLECEPRSLQARVEWTFQRAGVTAHTQVLAEERTERTARGLLLRRLRRRDSGVYLCAAVE 1940 + +Query: 648 NSFKQTIAKINFKVLDS 664 + F Q + +++ VL + +Sbjct: 1941QGFTQPLRRLSLHVLSA 1991 + + +>BC029590 + Length = 1514 + + Score = 424 bits (1091), Expect = e-118 + Identities = 213/445 (47%), Positives = 300/445 (67%), Gaps = 3/445 (0%) + Frame = +3 + +Query: 305 LEDVFLLETDNPRTTLVYGIFTTSSSVFKGSAVCVYHLSDIQTVFNGPFAHKEGPNHQLI 364 + +ED++LL T + R +VYG+FTT+SS+FKGSAVCVY ++DI+ VFNGP+AHKE +H+ + +Sbjct: 99 IEDIYLLPTRDERNPVVYGVFTTTSSIFKGSAVCVYSMADIRAVFNGPYAHKESADHRWV 278 + +Query: 365 SYQGRIPYPRPGTCPGGAFTPNMRTTKEFPDDVVTFIRNHPLMYNSIYPIHKRPLIVRIG 424 + Y GRIPYPRPGTCP + P +++T++FPDDV++FI+ H +MY S+YP+ P RI +Sbjct: 279 QYDGRIPYPRPGTCPSKTYDPLIKSTRDFPDDVISFIKRHSVMYKSVYPVAGGPTFKRIN 458 + +Query: 425 TDYKYTKIAVDRVNAADGRYHVLFLGTDRGTVQKVVVLPTNNSVSGELILEELEVFKNHA 484 + DY+ T+I VD V A DG+Y V+FLGTD GTV KVV + E++LEEL++FK+ + +Sbjct: 459 VDYRLTQIVVDHVIAEDGQYDVMFLGTDIGTVLKVVSISKEKWNMEEVVLEELQIFKHSS 638 + +Query: 485 PITTMKISSKKQQLYVSSNEGVSQVSLHRCHIYGTACADCCLARDPYCAWDGHSCSRFYP 544 + I M++S K+QQLY+ S +G+ Q+SLHRC YG ACADCCLARDPYCAWDG++CSR+ P +Sbjct: 639 IILNMELSLKQQQLYIGSRDGLVQLSLHRCDTYGKACADCCLARDPYCAWDGNACSRYAP 818 + +Query: 545 TGKRRSRRQDVRHGNPLTQCRGF-NLKAYRNAAEIVQYGVKNNTTFLECAPKSPQASIKW 603 + T KRR+RRQDV++G+P+TQC + ++ A E V +G++ N+TFLEC PKS QA+IKW +Sbjct: 819 TSKRRARRQDVKYGDPITQCWDIEDSISHETADEKVIFGIEFNSTFLECIPKSQQATIKW 998 + +Query: 604 LLQKDKD-RRKEVKLNERIIATSQGLLIRSVQGSDQGLYHCIATENSFKQTIAKINFKVL 662 + +Q+ D R+E+K +ERII T GLLIRS+Q D G+Y+C A E++F TI K+ V+ +Sbjct: 999 YIQRSGDEHREELKPDERIIKTEYGLLIRSLQKKDSGMYYCKAQEHTFIHTIVKLTLNVI 1178 + +Query: 663 DSE-MVAVVTDKWSPWTWASSVRALPFHPKDIMGAFSHSEMQMINQYCKDTRQQHQQGDE 721 + ++E M + + KD + S ++QYC+ Q + +Sbjct: 1179ENEQMENTQRAEHEEGKVKDLLAESRLRYKDYIQILSSPNFS-LDQYCE---QMWHREKR 1346 + +Query: 722 SQKMRGDYGKLKALINSRKSRNRRN 746 + Q+ +G K K + +K RNRR+ +Sbjct: 1347RQRNKGG-PKWKHMQEMKKKRNRRH 1418 + + + Database: /cluster/bluearc/markd/snpProtein/kgMrna.fa + Posted date: Nov 13, 2003 9:35 AM + Number of letters in database: 89,350,383 + Number of sequences in database: 37,452 + +Lambda K H + 0.321 0.135 0.413 + +Gapped +Lambda K H + 0.267 0.0410 0.140 + + +Matrix: BLOSUM62 +Gap Penalties: Existence: 11, Extension: 1 +Number of Hits to DB: 92,326,407 +Number of Sequences: 37452 +Number of extensions: 1660308 +Number of successful extensions: 10494 +Number of sequences better than 10.0: 79 +Number of HSP's better than 10.0 without gapping: 3256 +Number of HSP's successfully gapped in prelim test: 640 +Number of HSP's that attempted gapping in prelim test: 6681 +Number of HSP's gapped (non-prelim): 4581 +length of query: 751 +length of database: 29,783,461 +effective HSP length: 115 +effective length of query: 636 +effective length of database: 25,476,481 +effective search space: 16203041916 +effective search space used: 16203041916 +frameshift window, decay const: 50, 0.1 +T: 13 +A: 40 +X1: 16 ( 7.4 bits) +X2: 38 (14.6 bits) +X3: 64 (24.7 bits) +S1: 41 (21.8 bits) +S2: 68 (30.8 bits) +TBLASTN 2.2.6 [Apr-09-2003] + + +Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, +Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), +"Gapped BLAST and PSI-BLAST: a new generation of protein database search +programs", Nucleic Acids Res. 25:3389-3402. + +Query= O14490 + (977 letters) + +Database: /cluster/bluearc/markd/snpProtein/kgMrna.fa + 37,452 sequences; 89,350,383 total letters + +Searching..................................................done + + Score E +Sequences producing significant alignments: (bits) Value + +AB000277 1761 0.0 +AF119818 798 0.0 +AB023181 671 0.0 +AF131778 142 2e-33 +BX248255 74 2e-12 +D13633 74 2e-12 +BC010658 74 2e-12 +AB076695 74 2e-12 +BT007344 74 2e-12 +BC002905 35 0.90 + +>AB000277 + Length = 3347 + + Score = 1761 bits (4561), Expect = 0.0 + Identities = 883/977 (90%), Positives = 883/977 (90%) + Frame = +2 + +Query: 1 MKGLSGSRSHHHGVTCDSACDSLSHHSDRKPYLLSPVEHHPADHPYYTQRNSFQAECVGP 60 + MKGLSGSRSHHHGVTCDSACDSLSHHSDRKPYLLSPVEHHPADHPYYTQRNSFQAECVGP +Sbjct: 68 MKGLSGSRSHHHGVTCDSACDSLSHHSDRKPYLLSPVEHHPADHPYYTQRNSFQAECVGP 247 + +Query: 61 FSDPLASSTFPRRHYTSQQELKDECALVPRTLATKANRIPANLLDQFERQLPLSRDGYHT 120 + FSDPLASSTFPRRHYTSQQELKDECALVPRTLATKANRIPANLLDQFERQLPLSRDGYHT +Sbjct: 248 FSDPLASSTFPRRHYTSQQELKDECALVPRTLATKANRIPANLLDQFERQLPLSRDGYHT 427 + +Query: 121 LQYKRTAVEHRSDSPGRIRHLVHSVQKLFTKSHSLEGPSKGSVNGGKASPDEAQAARYGK 180 + LQYKRTAVEHRSDSPGRIRHLVHSVQKLFTKSHSLEGPSKGSVNGGKASPDEAQAARYGK +Sbjct: 428 LQYKRTAVEHRSDSPGRIRHLVHSVQKLFTKSHSLEGPSKGSVNGGKASPDEAQAARYGK 607 + +Query: 181 RSKSKERRAEPKARPSTSPGWWSSDDNLDGDMCIYHAPSGVMTMGRCPDRSASQYFLEAY 240 + RSKSKERRAEPKARPSTSPGWWSSDDNLDGDMCIYHAPSGVMTMGRCPDRSASQYFLEAY +Sbjct: 608 RSKSKERRAEPKARPSTSPGWWSSDDNLDGDMCIYHAPSGVMTMGRCPDRSASQYFLEAY 787 + +Query: 241 NTISEQAVKASRSNNDVKCSTCANLPVSLDTPLLKKSAWSSTLTVSRAREVYQKASVNMD 300 + NTISEQAVKASRSNNDVKCSTCANLPVSLDTPLLKKSAWSSTLTVSRAREVYQKASVNMD +Sbjct: 788 NTISEQAVKASRSNNDVKCSTCANLPVSLDTPLLKKSAWSSTLTVSRAREVYQKASVNMD 967 + +Query: 301 QAMVKSESCQQERSCQYLQVPQDEWTGYTPRGKDDEIPCRRMRSGSYIKAMGDEDSGDSD 360 + QAMVKSESCQQERSCQYLQVPQDEWTGYTPRGKDDEIPCRRMRSGSYIKAMGDEDSGDSD +Sbjct: 968 QAMVKSESCQQERSCQYLQVPQDEWTGYTPRGKDDEIPCRRMRSGSYIKAMGDEDSGDSD 1147 + +Query: 361 TSPKPSPKVAARRESYLKATQPSLTELTTLKISNEHSPKLQIRSHSYLRAVSEVSINRSL 420 + TSPKPSPKVAARRESYLKATQPSLTELTTLKISNEHSPKLQIRSHSYLRAVSEVSINRSL +Sbjct: 1148 TSPKPSPKVAARRESYLKATQPSLTELTTLKISNEHSPKLQIRSHSYLRAVSEVSINRSL 1327 + +Query: 421 DSLDPAGLLTSPKFRSRNESYMRAMSTISQVSEMEVNGQFESVCESVFSELESQAVEALD 480 + DSLDPAGLLTSPKFRSRNESYMRAMSTISQVSEMEVNGQFESVCESVFSELESQAVEALD +Sbjct: 1328 DSLDPAGLLTSPKFRSRNESYMRAMSTISQVSEMEVNGQFESVCESVFSELESQAVEALD 1507 + +Query: 481 LPMPGCFRMRSHSYVRAIEKGCSQDDECXXXXXXXXXXXXXXXXXXXXXXXXXCIXXXXX 540 + LPMPGCFRMRSHSYVRAIEKGCSQDDEC CI +Sbjct: 1508 LPMPGCFRMRSHSYVRAIEKGCSQDDECVSLRSSSPPRTTTTVRTIQSSTVSSCITTYKK 1687 + +Query: 541 XXXXXXXXXXXXXFISITAQSSTESAQDAYMDGQGQRGDIISQSGLSNSTESLDSMKALT 600 + FISITAQSSTESAQDAYMDGQGQRGDIISQSGLSNSTESLDSMKALT +Sbjct: 1688 TPPPVPPRTTTKPFISITAQSSTESAQDAYMDGQGQRGDIISQSGLSNSTESLDSMKALT 1867 + +Query: 601 AAIEAANAQIHGPASQHMGNNXXXXXXXXXXXXXXXEDRKKDHFKKNRCLSIGIQVDDAE 660 + AAIEAANAQIHGPASQHMGNN EDRKKDHFKKNRCLSIGIQVDDAE +Sbjct: 1868 AAIEAANAQIHGPASQHMGNNTATVTTTTTIATVTTEDRKKDHFKKNRCLSIGIQVDDAE 2047 + +Query: 661 EPDKTGENKAPSKFQSVGVQVEEEKCFRRFTRSNSVTTAVQADLDFHDNLENSLESIEDN 720 + EPDKTGENKAPSKFQSVGVQVEEEKCFRRFTRSNSVTTAVQADLDFHDNLENSLESIEDN +Sbjct: 2048 EPDKTGENKAPSKFQSVGVQVEEEKCFRRFTRSNSVTTAVQADLDFHDNLENSLESIEDN 2227 + +Query: 721 SCPGPMARQFSRDASTSTVSIQGSGNHYHACAAXXXXXXXXXPSILPPPDPWIDSITEDP 780 + SCPGPMARQFSRDASTSTVSIQGSGNHYHACAA PSILPPPDPWIDSITEDP +Sbjct: 2228 SCPGPMARQFSRDASTSTVSIQGSGNHYHACAADDDFDTDFDPSILPPPDPWIDSITEDP 2407 + +Query: 781 LEAVQRSVCHRDGHWFLKLLQAERDRMEGWCQQMEREERENNLPEDILGKIRTAVGSAQL 840 + LEAVQRSVCHRDGHWFLKLLQAERDRMEGWCQQMEREERENNLPEDILGKIRTAVGSAQL +Sbjct: 2408 LEAVQRSVCHRDGHWFLKLLQAERDRMEGWCQQMEREERENNLPEDILGKIRTAVGSAQL 2587 + +Query: 841 LMAQKFYQFRELCEENLNPNAHPRPTSQDLAGFWDMLQLSIENISMKFDELHQLKANNWK 900 + LMAQKFYQFRELCEENLNPNAHPRPTSQDLAGFWDMLQLSIENISMKFDELHQLKANNWK +Sbjct: 2588 LMAQKFYQFRELCEENLNPNAHPRPTSQDLAGFWDMLQLSIENISMKFDELHQLKANNWK 2767 + +Query: 901 QMDPLDKKERRXXXXXXXXXXXXXXXLIRERSLESSQRQEXXXXXXXXXXXXSVRQNSAT 960 + QMDPLDKKERR LIRERSLESSQRQE SVRQNSAT +Sbjct: 2768 QMDPLDKKERRAPPPVPKKPAKGPAPLIRERSLESSQRQEARKRLMAAKRAASVRQNSAT 2947 + +Query: 961 ESAESIEIYIPEAQTRL 977 + ESAESIEIYIPEAQTRL +Sbjct: 2948 ESAESIEIYIPEAQTRL 2998 + + +>AF119818 + Length = 10141 + + Score = 798 bits (2062), Expect = 0.0 + Identities = 492/1020 (48%), Positives = 607/1020 (59%), Gaps = 43/1020 (4%) + Frame = +3 + +Query: 1 MKGLSGSRSHH---HGVTCDSA----CDSLSHHSD-RKPYLLSPVEHHPADHPYYTQRNS 52 + MKGLSGSR+ G TC A C+ L H D R PYLLSP + P + R+S +Sbjct: 135 MKGLSGSRTQPPLCSGHTCGLAPPEDCEHLHHGPDARPPYLLSPADSCPGGRHRCSPRSS 314 + +Query: 53 FQAECVGP---FSDPLASSTFPRRHYTSQQELKDECALVPRTLATKANRIPANLLDQFER 109 + +ECV D ++SSTFPR HY+S + +D+CA+ K NRIPANLLDQFE+ +Sbjct: 315 VHSECVMMPVVLGDHVSSSTFPRMHYSSHYDTRDDCAVAHA--GAKINRIPANLLDQFEK 488 + +Query: 110 QLPLSRDGYHTLQYKRT--AVEHRSDSPGRIRHLVHSVQKLFTKSHSLEGPSKGSVNGGK 167 + QLPL RDG+HTLQY+RT A E RS+SPGRIRHLVHSVQKLFTKSHSLEG SK + NG K +Sbjct: 489 QLPLHRDGFHTLQYQRTSAAAEQRSESPGRIRHLVHSVQKLFTKSHSLEGSSKSNANGTK 668 + +Query: 168 ASP-----DEAQAARYGKRSKSKERRAEPKARPSTSPGWWSSDDNLDGDMCIYHAPSGVM 222 + A A A++ KRSKSKER+ E K RP S WWSSDDNLD D Y PS + +Sbjct: 669 ADGRADDHHHAHHAKHSKRSKSKERKPEGKPRPGMS-SWWSSDDNLDSDST-YRTPSVLN 842 + +Query: 223 TMGRCPDRSASQYFLEAYNTISEQAVKASRSNNDVKCSTCANLPVSLDTPLLKKSAWSST 282 + P A Y + + ++K S+SNNDVKCS C L ++ D LK+S+WS T +Sbjct: 843 RHHLGP--VAHCYPDALQSPFGDLSLKTSKSNNDVKCSACEGLALTPDAKYLKRSSWS-T 1013 + +Query: 283 LTVSRAREVYQKASVNMDQAMVKSESCQQERSCQYLQVPQDEWTGYTPRGKDDEIPCRRM 342 + LTVS+A+E Y+K+S+N+D+ ++ ++ R C YLQVPQDEW GY GKD+EIPCRRM +Sbjct: 1014 LTVSQAKEAYRKSSLNLDKPLLHQDAKPALRPCHYLQVPQDEWGGYPTGGKDEEIPCRRM 1193 + +Query: 343 RSGSYIKAMGDEDSGDSDTSPKPSPKVAARRESYLKATQPSLTELTTLKISNEHSPKLQI 402 + RSGSYIKAMGDE+SG+SD+SPK SPK A E LK S P + +Sbjct: 1194 RSGSYIKAMGDEESGESDSSPKTSPKSAILXEPLLK--------------SIGQRPLGEH 1331 + +Query: 403 RSHSYLRAVSEVSINRSLDSLDPAGLLTSPKFRSRNESYMRAMST------ISQVSEMEV 456 + ++ +YL+A S+V + SLDPA SPKFRSRN+SYMRA+ST +SQVSE E+ +Sbjct: 1332 QTQTYLQAASDVPVGH---SLDPAANYNSPKFRSRNQSYMRAVSTLSQASCVSQVSEAEI 1502 + +Query: 457 NGQFESVCESVFSELESQAVEALDLPMPGCFRMRSHSYVRAIEKGCSQDDECXXXXXXXX 516 + NGQFESVCESVFSE+ESQA++ALDL PGCFR RSHSY+RAI+ G SQDDEC +Sbjct: 1503 NGQFESVCESVFSEVESQAMDALDL--PGCFRTRSHSYLRAIQAGYSQDDECIPMMTPSD 1676 + +Query: 517 XXXXXXXXXXXXXXXXXCIXXXXXXXXXXXXXXXXXXFISITAQSSTESAQDAYMDGQGQ 576 + IS+TAQSSTES QDAY D + Q +Sbjct: 1677 ITSTIRSTAAVS------YTNYKKTPPPVPPRTTSKPLISVTAQSSTESTQDAYQDSRAQ 1838 + +Query: 577 RGDIISQS--GLSNSTESLDSMKALTAAIEAANAQIHGPASQHMGNNXXXXXXXXXXXXX 634 + R Q GL NST+SLDS KA+ A+E A AQ H P SQ +Sbjct: 1839 RMSPWPQDSRGLYNSTDSLDSNKAMNLALETAAAQRHLPESQSSSVRTSDKAILVS---- 2006 + +Query: 635 XXEDRKKDHFKKNRCLSIGIQVDDAEEP--------------DKTGENKAPSKFQSVGVQ 680 + K + K+RC SIGIQ D+E P D E+ ++ SVGVQ +Sbjct: 2007 -----KAEELLKSRCSSIGIQ--DSEFPEHQPYPRSDVETATDSDTESXGLREYHSVGVQ 2165 + +Query: 681 VEEEKCFRRFTRSNSVTTAVQADLDFHDNLENSLESIEDNSCPGPMARQFSRDASTSTVS 740 + VE+EK RF RSNSVT AVQADL+ + + + + G ++ S ++ + S +Sbjct: 2166 VEDEKRHGRFKRSNSVTAAVQADLEL-EGFPGHITTEDKGLQFGSSFQRHSEPSTPTQYS 2342 + +Query: 741 IQGSGNHYHACAAXXXXXXXXXPSILPPPDPWIDSITEDPLEAVQRSVCHRDGHWFLKLL 800 + + + S LPPPDPW++ D +E + S C RDG WFLKLL +Sbjct: 2343 AVRTVRTQGLFSYREDYRTQVDTSTLPPPDPWLEPAI-DTVETGRMSPCRRDGSWFLKLL 2519 + +Query: 801 QAERDRMEGWCQQMEREERENNLPEDILGKIRTAVGSAQLLMAQKFYQFRELCEENLNPN 860 + AE RMEGWC++MERE EN+L E+ILGKIR+AVGSAQLLM+QKF QF LC++N++P+ +Sbjct: 2520 HAETKRMEGWCKEMEREAEENDLSEEILGKIRSAVGSAQLLMSQKFQQFYWLCQQNMDPS 2699 + +Query: 861 AHPRPTSQDLAGFWDMLQLSIENISMKFDELHQLKANNWKQMD-PLDKKERRXXXXXXXX 919 + A PRPTSQDLAG+WDMLQLSIE++SMKFDEL +L+ N+WK M+ P K+ER+ +Sbjct: 2700 AMPRPTSQDLAGYWDMLQLSIEDVSMKFDELQRLRLNDWKMMESPERKEERKVPPPIPKK 2879 + +Query: 920 XXXXXXXLIRERSLE--SSQRQEXXXXXXXXXXXXSVRQNSATESAESIEIYIPEAQTRL 977 + + RE+SL+ QRQE S RQNSA+E A+SIEIYIPEAQTRL +Sbjct: 2880 PPKGKFPITREKSLDLPDRQRQEARRRLMAAKRAASFRQNSASERADSIEIYIPEAQTRL 3059 + + +>AB023181 + Length = 5007 + + Score = 671 bits (1732), Expect = 0.0 + Identities = 425/1033 (41%), Positives = 559/1033 (54%), Gaps = 56/1033 (5%) + Frame = +1 + +Query: 1 MKGLSGSRSHHHGVTCDSACDSLSHHSDRKPYLLSPVEHHPADHPYYTQRNSFQAECVGP 60 + MKGL SR H + D + L +DR PYLLSP E A + +N+ + + P +Sbjct: 436 MKGLGDSRPRHLSDSLDPPHEPLFAGTDRNPYLLSPTEAF-AREARFPGQNTLPGDGLFP 612 + +Query: 61 FSD--PLASSTFPRRHYTSQQELKDECALVPRTLATKANRIPANLLDQFERQLPLSRDGY 118 + ++ P SSTFPR HY S E+ +E ATK NR+PANLLDQFE+QLP+ RDG+ +Sbjct: 613 LNNQLPPPSSTFPRIHYNSHFEVPEESPFPSHAQATKINRLPANLLDQFEKQLPIHRDGF 792 + +Query: 119 HTLQYKRTAVEHRSDSPGRIRHLVHSVQKL-FTKSHSLEGPSKGSVNGGKASPDEAQAAR 177 + TLQ+ R + R +SPGRIRHLVHSVQ+L FTK+ SLEG + G V GG S +Sbjct: 793 STLQFPRGEAKARGESPGRIRHLVHSVQRLFFTKAPSLEG-TAGKV-GGNGSKKGGMEDG 966 + +Query: 178 YGKRSKSKER--RAEPKARP-STSPGWWSSDDNLDGDMCIYHA---PSGVMTMGRCPDRS 231 + G+R+KSKER EPK R S GWWSSDDNLDG+ + + SG+M +GR +RS +Sbjct: 967 KGRRAKSKERAKAGEPKRRSRSNISGWWSSDDNLDGEAGAFRSSGPASGLMILGRQAERS 1146 + +Query: 232 ASQYFLEAYNTISEQAVKASRSNN---------DVKCSTCANLPVSLDTPLLKKSAWSST 282 + +YF+ AYNTIS +K +++N +TC +L V DT +K+ +W ST +Sbjct: 1147 QPRYFMHAYNTISGHMLKTTKNNTTELTAPPPPPAPPATCPSLGVGTDTNYVKRGSW-ST 1323 + +Query: 283 LTVSRAREVYQKASVNMDQAMVKSESCQQERSCQYLQVP--QDEW--TGYTPRGKD---- 334 + LT+S A EV QK S +D++++KS+SC Q + YLQVP EW T +PR D +Sbjct: 1324 LTLSHAHEVCQKTSATLDKSLLKSKSCHQGLAYHYLQVPGGGGEWSTTLLSPRETDAAAE 1503 + +Query: 335 DEIPCRRMRSGSYIKAMGDEDSGDSDTSPKPSPKVAARRESYLKATQPSLTELTTLKISN 394 + IPCRRMRSGSYIKAMGDEDS +S SPKPSPK AARR+SYL+ATQ SL E +Sbjct: 1504 GPIPCRRMRSGSYIKAMGDEDSDESGGSPKPSPKTAARRQSYLRATQQSLGE-------- 1659 + +Query: 395 EHSPKLQIRSHSYLRAVSEVSINRSLDSLDPAGLLTSPKFRSRNESYMRAMSTIS----- 449 + + +P+ RSLD LD +L K S E Y +++ +Sbjct: 1660 QSNPR------------------RSLDRLDSVDMLLPSKCPSWEEDYTPVSDSLNDSSCI 1785 + +Query: 450 ------------------QVSEMEVNGQFESVCESVFSELESQAVEALDLPMPGCFRMRS 491 + QV E E++ Q+E+ CES SE ES A E LDLP+P FR RS +Sbjct: 1786 SQIFGQASLIPQLFGHEQQVREAELSDQYEAACESACSEAESTAAETLDLPLPSYFRSRS 1965 + +Query: 492 HSYVRAIEKGCSQDDECXXXXXXXXXXXXXXXXXXXXXXXXXCIXXXXXXXXXXXXXXXX 551 + HSY+RAI+ GCSQ+++ C+ +Sbjct: 1966 HSYLRAIQAGCSQEEDSVSLQSLSPPPSTGSLSNSRTLPSSSCLVAYKKTPPPVPPRTTS 2145 + +Query: 552 XXFISITAQSSTESAQDAYMDGQGQRGDIISQSGLSNSTESLDSMKALTAAIEAANAQIH 611 + FIS+T QSSTESAQD Y+D Q + ++ SQSGLSNS++SLDS + A +Sbjct: 2146 KPFISVTVQSSTESAQDTYLDSQDHKSEVTSQSGLSNSSDSLDSSTRPPSVTRGGVA--- 2316 + +Query: 612 GPASQHMGNNXXXXXXXXXXXXXXXEDRKKDHFKKNRCLSIGIQVDDAEEPDKTGENKAP 671 + PA + + + K + SIGIQ E+ P +Sbjct: 2317 -PAPEAPEPPPKHAALKSEQGTLTSSESHPEAAPKRKLSSIGIQERTRRNGSHLSEDNGP 2493 + +Query: 672 SKFQSVGVQVEEEKCFRRFTRSNSVTTAVQADLDFHDNLENSLESIE---DNSCPGPMAR 728 + + E S+S+++ D D D ++S +S E + P P + +Sbjct: 2494 KAIDVMAPSSESS------VPSHSMSSRRDTDSDTQDANDSSCKSSERSLPDCTPHPNSI 2655 + +Query: 729 QFSRDASTSTVSIQGSGNHYHACAAXXXXXXXXXPSILPPPDPWIDSITEDPLEAVQRSV 788 + + Q N + S LPPPDPW+++ + P E Q +Sbjct: 2656 SIDAGPRQAPKIAQIKRN----LSYGDNSDPALEASSLPPPDPWLETSSSSPAEPAQPGA 2823 + +Query: 789 CHRDGHWFLKLLQAERDRMEGWCQQMEREERENNLPEDILGKIRTAVGSAQLLMAQKFYQ 848 + C RDG+WFLKLLQAE +R+EGWC QM++E +ENNL E++LGK+ +AVGSAQLLM+QKF Q +Sbjct: 2824 CRRDGYWFLKLLQAETERLEGWCCQMDKETKENNLSEEVLGKVLSAVGSAQLLMSQKFQQ 3003 + +Query: 849 FRELCEENLNPNAHPRPTSQDLAGFWDMLQLSIENISMKFDELHQLKANNWKQMDPLDKK 908 + FR LCE+NLNP+A+PRPT+QDLAGFWD+LQLSIE+ISMKFDEL+ LKAN+W+ ++ +K+ +Sbjct: 3004 FRGLCEQNLNPDANPRPTAQDLAGFWDLLQLSIEDISMKFDELYHLKANSWQLVETPEKR 3183 + +Query: 909 --ERRXXXXXXXXXXXXXXXLIRERSLESS--QRQEXXXXXXXXXXXXSVRQNSATESAE 964 + E++ + R+++ ++S QRQE SVRQNSATESA+ +Sbjct: 3184 KEEKKPPPPVPKKPAKSKPAVSRDKASDASDKQRQEARKRLLAAKRAASVRQNSATESAD 3363 + +Query: 965 SIEIYIPEAQTRL 977 + SIEIY+PEAQTRL +Sbjct: 3364 SIEIYVPEAQTRL 3402 + + +>AF131778 + Length = 1645 + + Score = 142 bits (359), Expect = 2e-33 + Identities = 82/177 (46%), Positives = 108/177 (61%), Gaps = 5/177 (2%) + Frame = +3 + +Query: 806 RMEGWCQQMER---EERENNLPEDILGKIRTAVGSAQLLMAQKFYQFRELCEENLNPNAH 862 + R W R R + P + R+AVGS QLL++QK QF LC+++++P A +Sbjct: 453 RWRSWSTGASRWSVRRRTMSYPRRSWRRSRSAVGSTQLLLSQKVQQFFRLCQQSMDPTAF 632 + +Query: 863 PRPTSQDLAGFWDMLQLSIENISMKFDELHQLKANNWKQMDPLDKKERRXXXXXXXXXXX 922 + P PT QDLAGFWD+LQLSIE++++KF EL QLKAN+WK ++P K+E++ +Sbjct: 633 PVPTFQDLAGFWDLLQLSIEDVTLKFLELQQLKANSWKLLEP--KEEKKVPPPIPKKPLR 806 + +Query: 923 XXXXLIRERSLES--SQRQEXXXXXXXXXXXXSVRQNSATESAESIEIYIPEAQTRL 977 + ++ERSL+S QRQE S R +SATESA+SIEIYIPEAQTRL +Sbjct: 807 GRGVPVKERSLDSVDRQRQEARKRLLAAKRAASFRHSSATESADSIEIYIPEAQTRL 977 + + + + Score = 100 bits (248), Expect = 2e-20 + Identities = 65/184 (35%), Positives = 87/184 (47%), Gaps = 21/184 (11%) + Frame = +2 + +Query: 674 FQSVGVQVEEEKCFRRFTRSNSVTTAVQADLDFHDNLENSLESIEDNSC----------- 722 + F S+GVQVEE+K RF RSNSVT VQADL+ + + ED + +Sbjct: 2 FHSIGVQVEEDKRRARFKRSNSVTAGVQADLELEGLAGLATVATEDKALQFGRSFQRHAS 181 + +Query: 723 ---PGPMARQFSRDASTSTVSIQGSGNHYHACAAXXXXXXXXXPSILPPPDP-------W 772 + PGP A +S + T Y P+ P P P W +Sbjct: 182 EPQPGPRAPTYSVFRTVHTQGQWAYREGYPLPYEPPATDGSPGPAPAPTPGPGAGRRDSW 361 + +Query: 773 IDSITEDPLEAVQRSVCHRDGHWFLKLLQAERDRMEGWCQQMEREERENNLPEDILGKIR 832 + I+ + ++ + S C RDG WF+K+L+AE +++E WCQQMERE + LPE+IL KI +Sbjct: 362 IERGSRSLPDSGRASPCPRDGEWFIKMLRAEVEKLEHWCQQMEREAEDYELPEEILEKIP 541 + +Query: 833 TAVG 836 + G +Sbjct: 542 QCCG 553 + + +>BX248255 + Length = 2718 + + Score = 73.6 bits (179), Expect = 2e-12 + Identities = 38/111 (34%), Positives = 63/111 (56%) + Frame = +3 + +Query: 790 HRDGHWFLKLLQAERDRMEGWCQQMEREERENNLPEDILGKIRTAVGSAQLLMAQKFYQF 849 + H +F +LQ+E +++ C + +R+ E ++P+D IRTAVG +LLM ++F QF +Sbjct: 1362 HHGVPYFRNILQSETEKLTSHCFEWDRK-LELDIPDDAKDLIRTAVGQTRLLMKERFKQF 1538 + +Query: 850 RELCEENLNPNAHPRPTSQDLAGFWDMLQLSIENISMKFDELHQLKANNWK 900 + L ++ T DL GFWDM+ IE++ KF+ L +L+ + W+ +Sbjct: 1539 EGLVDDCEYKRGIKETTCTDLDGFWDMVSFQIEDVIHKFNNLIKLEESGWQ 1691 + + +>D13633 + Length = 2852 + + Score = 73.6 bits (179), Expect = 2e-12 + Identities = 38/111 (34%), Positives = 63/111 (56%) + Frame = +1 + +Query: 790 HRDGHWFLKLLQAERDRMEGWCQQMEREERENNLPEDILGKIRTAVGSAQLLMAQKFYQF 849 + H +F +LQ+E +++ C + +R+ E ++P+D IRTAVG +LLM ++F QF +Sbjct: 1369 HHGVPYFRNILQSETEKLTSHCFEWDRK-LELDIPDDAKDLIRTAVGQTRLLMKERFKQF 1545 + +Query: 850 RELCEENLNPNAHPRPTSQDLAGFWDMLQLSIENISMKFDELHQLKANNWK 900 + L ++ T DL GFWDM+ IE++ KF+ L +L+ + W+ +Sbjct: 1546 EGLVDDCEYKRGIKETTCTDLDGFWDMVSFQIEDVIHKFNNLIKLEESGWQ 1698 + + +>BC010658 + Length = 2886 + + Score = 73.6 bits (179), Expect = 2e-12 + Identities = 38/111 (34%), Positives = 63/111 (56%) + Frame = +2 + +Query: 790 HRDGHWFLKLLQAERDRMEGWCQQMEREERENNLPEDILGKIRTAVGSAQLLMAQKFYQF 849 + H +F +LQ+E +++ C + +R+ E ++P+D IRTAVG +LLM ++F QF +Sbjct: 1388 HHGVPYFRNILQSETEKLTSHCFEWDRK-LELDIPDDAKDLIRTAVGQTRLLMKERFKQF 1564 + +Query: 850 RELCEENLNPNAHPRPTSQDLAGFWDMLQLSIENISMKFDELHQLKANNWK 900 + L ++ T DL GFWDM+ IE++ KF+ L +L+ + W+ +Sbjct: 1565 EGLVDDCEYKRGIKETTCTDLDGFWDMVSFQIEDVIHKFNNLIKLEESGWQ 1717 + + +>AB076695 + Length = 2979 + + Score = 73.6 bits (179), Expect = 2e-12 + Identities = 38/111 (34%), Positives = 63/111 (56%) + Frame = +2 + +Query: 790 HRDGHWFLKLLQAERDRMEGWCQQMEREERENNLPEDILGKIRTAVGSAQLLMAQKFYQF 849 + H +F +LQ+E +++ C + +R+ E ++P+D IRTAVG +LLM ++F QF +Sbjct: 1496 HHGVPYFRNILQSETEKLTSHCFEWDRK-LELDIPDDAKDLIRTAVGQTRLLMKERFKQF 1672 + +Query: 850 RELCEENLNPNAHPRPTSQDLAGFWDMLQLSIENISMKFDELHQLKANNWK 900 + L ++ T DL GFWDM+ IE++ KF+ L +L+ + W+ +Sbjct: 1673 EGLVDDCEYKRGIKETTCTDLDGFWDMVSFQIEDVIHKFNNLIKLEESGWQ 1825 + + +>BT007344 + Length = 2298 + + Score = 73.6 bits (179), Expect = 2e-12 + Identities = 38/111 (34%), Positives = 63/111 (56%) + Frame = +1 + +Query: 790 HRDGHWFLKLLQAERDRMEGWCQQMEREERENNLPEDILGKIRTAVGSAQLLMAQKFYQF 849 + H +F +LQ+E +++ C + +R+ E ++P+D IRTAVG +LLM ++F QF +Sbjct: 1036 HHGVPYFRNILQSETEKLTSHCFEWDRK-LELDIPDDAKDLIRTAVGQTRLLMKERFKQF 1212 + +Query: 850 RELCEENLNPNAHPRPTSQDLAGFWDMLQLSIENISMKFDELHQLKANNWK 900 + L ++ T DL GFWDM+ IE++ KF+ L +L+ + W+ +Sbjct: 1213 EGLVDDCEYKRGIKETTCTDLDGFWDMVSFQIEDVIHKFNNLIKLEESGWQ 1365 + + +>BC002905 + Length = 1679 + + Score = 34.7 bits (78), Expect = 0.90 + Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%) + Frame = +3 + +Query: 152 SHSLEGPSKGSVNGGKASPDEAQAARYGKRSKSKERRAEPKARPSTSP-GWWSS 204 + S + GP + G PD AAR +S R AEP+ P SP G W+S +Sbjct: 942 SRNSSGPRSSAAPGSPLPPDPPPAARSAAS*RSWHRAAEPRLPPPPSPSGTWAS 1103 + + + Database: /cluster/bluearc/markd/snpProtein/kgMrna.fa + Posted date: Nov 13, 2003 9:35 AM + Number of letters in database: 89,350,383 + Number of sequences in database: 37,452 + +Lambda K H + 0.313 0.127 0.371 + +Gapped +Lambda K H + 0.267 0.0410 0.140 + + +Matrix: BLOSUM62 +Gap Penalties: Existence: 11, Extension: 1 +Number of Hits to DB: 106,814,494 +Number of Sequences: 37452 +Number of extensions: 1833595 +Number of successful extensions: 8926 +Number of sequences better than 10.0: 18 +Number of HSP's better than 10.0 without gapping: 2949 +Number of HSP's successfully gapped in prelim test: 755 +Number of HSP's that attempted gapping in prelim test: 5684 +Number of HSP's gapped (non-prelim): 4265 +length of query: 977 +length of database: 29,783,461 +effective HSP length: 117 +effective length of query: 860 +effective length of database: 25,401,577 +effective search space: 21845356220 +effective search space used: 21845356220 +frameshift window, decay const: 50, 0.1 +T: 13 +A: 40 +X1: 16 ( 7.2 bits) +X2: 38 (14.6 bits) +X3: 64 (24.7 bits) +S1: 42 (21.9 bits) +S2: 69 (31.2 bits) +TBLASTN 2.2.6 [Apr-09-2003] + + +Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, +Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), +"Gapped BLAST and PSI-BLAST: a new generation of protein database search +programs", Nucleic Acids Res. 25:3389-3402. + +Query= Q99986 + (396 letters) + +Database: /cluster/bluearc/markd/snpProtein/kgMrna.fa + 37,452 sequences; 89,350,383 total letters + +Searching..................................................done + + Score E +Sequences producing significant alignments: (bits) Value + +AB000449 773 0.0 +AY228372 346 5e-95 +AJ512204 345 6e-95 +BC027854 345 6e-95 +AY228369 345 1e-94 +AY228371 279 6e-81 +AF514788 207 2e-53 +BC023556 189 6e-48 +BC003558 132 1e-30 +BC015775 132 1e-30 + +>AB000449 + Length = 1662 + + Score = 773 bits (1995), Expect = 0.0 + Identities = 378/396 (95%), Positives = 378/396 (95%) + Frame = +1 + +Query: 1 MPRVKAAQAGRQSSAKRHLAEQFAVGEIITDMAKKEWKVGLPIGQGGFGCIYLADMNSSE 60 + MPRVKAAQAGRQSSAKRHLAEQFAVGEIITDMAKKEWKVGLPIGQGGFGCIYLADMNSSE +Sbjct: 76 MPRVKAAQAGRQSSAKRHLAEQFAVGEIITDMAKKEWKVGLPIGQGGFGCIYLADMNSSE 255 + +Query: 61 SVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHD 120 + SVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHD +Sbjct: 256 SVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHD 435 + +Query: 121 KNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKA 180 + KNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKA +Sbjct: 436 KNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKA 615 + +Query: 181 SNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKEYKEDPKRCHDGTIEFTSIDAHNGVAPSR 240 + SNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKEYKEDPKRCHDGTIEFTSIDAHNGVAPSR +Sbjct: 616 SNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKEYKEDPKRCHDGTIEFTSIDAHNGVAPSR 795 + +Query: 241 RGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPEKNKPGEIA 300 + RGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPEKNKPGEIA +Sbjct: 796 RGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPEKNKPGEIA 975 + +Query: 301 KYMETVKLLDYTEKPLYENLRDILLQGLKAIGSKDDGKLDLSVVENGGLXXXXXXXXXXX 360 + KYMETVKLLDYTEKPLYENLRDILLQGLKAIGSKDDGKLDLSVVENGGL +Sbjct: 976 KYMETVKLLDYTEKPLYENLRDILLQGLKAIGSKDDGKLDLSVVENGGLKAKTITKKRKK 1155 + +Query: 361 XXXXXXXPGVEDTEWSNTQTEEAIQTRSRTRKRVQK 396 + PGVEDTEWSNTQTEEAIQTRSRTRKRVQK +Sbjct: 1156EIEESKEPGVEDTEWSNTQTEEAIQTRSRTRKRVQK 1263 + + +>AY228372 + Length = 1782 + + Score = 346 bits (887), Expect = 5e-95 + Identities = 172/309 (55%), Positives = 219/309 (70%) + Frame = +2 + +Query: 16 KRHLAEQFAVGEIITDMAKKEWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPS 75 + K L F G+++ DM +W +G IG GGFG IYLA + DA VVKVE +Sbjct: 137 KYKLPIPFPEGKVLDDMEGNQWVLGKKIGSGGFGLIYLAFPTNKPE--KDARHVVKVEYQ 310 + +Query: 76 DNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRFG 135 + +NGPLF+ELKFYQR AK + I+KWI ++L YLG+P ++GSGL + G+SYRFM+M+R G +Sbjct: 311 ENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGSGLTEFKGRSYRFMVMERLG 490 + +Query: 136 SDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQVYL 195 + DLQKI N F + TVLQL +R+LD+LEYIHE+EYVHGDIKA+NLLL YKNPDQVYL +Sbjct: 491 IDLQKISGQNGT-FKKSTVLQLGIRMLDVLEYIHENEYVHGDIKAANLLLGYKNPDQVYL 667 + +Query: 196 VDYGLAYRYCPEGVHKEYKEDPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWL 255 + DYGL+YRYCP G HK+Y+E+P++ H+GTIEFTS+DAH GVA SRR D+EILGYCM++WL +Sbjct: 668 ADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWL 847 + +Query: 256 TGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPEKNKPGEIAKYMETVKLLDYTEKP 315 + G LPWE NLKDP V+ +K + + + K P + EIA+++ L Y EKP +Sbjct: 848 CGKLPWEQNLKDPVAVQTAKTNLLDELPQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKP 1027 + +Query: 316 LYENLRDIL 324 + Y+ L+ IL +Sbjct: 1028NYQALKKIL 1054 + + +>AJ512204 + Length = 1877 + + Score = 345 bits (886), Expect = 6e-95 + Identities = 171/309 (55%), Positives = 219/309 (70%) + Frame = +2 + +Query: 16 KRHLAEQFAVGEIITDMAKKEWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPS 75 + K L F G+++ DM +W +G IG GGFG IYLA + DA VVKVE +Sbjct: 152 KYKLPIPFPEGKVLDDMEGNQWVLGKKIGSGGFGLIYLAFPTNKPE--KDARHVVKVEYQ 325 + +Query: 76 DNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRFG 135 + +NGPLF+ELKFYQR AK + I+KWI ++L YLG+P ++GSGL + G+SYRFM+M+R G +Sbjct: 326 ENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGSGLTEFKGRSYRFMVMERLG 505 + +Query: 136 SDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQVYL 195 + DLQKI N F + TVLQL +R+LD+LEYIHE+EYVHGD+KA+NLLL YKNPDQVYL +Sbjct: 506 IDLQKISGQNGT-FKKSTVLQLGIRMLDVLEYIHENEYVHGDVKAANLLLGYKNPDQVYL 682 + +Query: 196 VDYGLAYRYCPEGVHKEYKEDPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWL 255 + DYGL+YRYCP G HK+Y+E+P++ H+GTIEFTS+DAH GVA SRR D+EILGYCM++WL +Sbjct: 683 ADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWL 862 + +Query: 256 TGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPEKNKPGEIAKYMETVKLLDYTEKP 315 + G LPWE NLKDP V+ +K + + + K P + EIA+++ L Y EKP +Sbjct: 863 CGKLPWEQNLKDPVAVQTAKTNLLDELPQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKP 1042 + +Query: 316 LYENLRDIL 324 + Y+ L+ IL +Sbjct: 1043NYQALKKIL 1069 + + +>BC027854 + Length = 1975 + + Score = 345 bits (886), Expect = 6e-95 + Identities = 171/309 (55%), Positives = 219/309 (70%) + Frame = +1 + +Query: 16 KRHLAEQFAVGEIITDMAKKEWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPS 75 + K L F G+++ DM +W +G IG GGFG IYLA + DA VVKVE +Sbjct: 205 KYKLPIPFPEGKVLDDMEGNQWVLGKKIGSGGFGLIYLAFPTNKPE--KDARHVVKVEYQ 378 + +Query: 76 DNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRFG 135 + +NGPLF+ELKFYQR AK + I+KWI ++L YLG+P ++GSGL + G+SYRFM+M+R G +Sbjct: 379 ENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGSGLTEFKGRSYRFMVMERLG 558 + +Query: 136 SDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQVYL 195 + DLQKI N F + TVLQL +R+LD+LEYIHE+EYVHGD+KA+NLLL YKNPDQVYL +Sbjct: 559 IDLQKISGQNGT-FKKSTVLQLGIRMLDVLEYIHENEYVHGDVKAANLLLGYKNPDQVYL 735 + +Query: 196 VDYGLAYRYCPEGVHKEYKEDPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWL 255 + DYGL+YRYCP G HK+Y+E+P++ H+GTIEFTS+DAH GVA SRR D+EILGYCM++WL +Sbjct: 736 ADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWL 915 + +Query: 256 TGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPEKNKPGEIAKYMETVKLLDYTEKP 315 + G LPWE NLKDP V+ +K + + + K P + EIA+++ L Y EKP +Sbjct: 916 CGKLPWEQNLKDPVAVQTAKTNLLDELPQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKP 1095 + +Query: 316 LYENLRDIL 324 + Y+ L+ IL +Sbjct: 1096NYQALKKIL 1122 + + +>AY228369 + Length = 1678 + + Score = 345 bits (884), Expect = 1e-94 + Identities = 169/301 (56%), Positives = 217/301 (72%) + Frame = +1 + +Query: 24 AVGEIITDMAKKEWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTE 83 + A G+++ DM +W +G IG GGFG IYLA + DA VVKVE +NGPLF+E +Sbjct: 106 AEGKVLDDMEGNQWVLGKKIGSGGFGLIYLAFPTNKPE--KDARHVVKVEYQENGPLFSE 279 + +Query: 84 LKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRFGSDLQKIYE 143 + LKFYQR AK + I+KWI ++L YLG+P ++GSGL + G+SYRFM+M+R G DLQKI +Sbjct: 280 LKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGSGLTEFKGRSYRFMVMERLGIDLQKISG 459 + +Query: 144 ANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQVYLVDYGLAYR 203 + N F + TVLQL +R+LD+LEYIHE+EYVHGD+KA+NLLL YKNPDQVYL DYGL+YR +Sbjct: 460 QNGT-FKKSTVLQLGIRMLDVLEYIHENEYVHGDVKAANLLLGYKNPDQVYLADYGLSYR 636 + +Query: 204 YCPEGVHKEYKEDPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWED 263 + YCP G HK+Y+E+P++ H+GTIEFTS+DAH GVA SRR D+EILGYCM++WL G LPWE +Sbjct: 637 YCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQ 816 + +Query: 264 NLKDPKYVRDSKIRYRENIASLMDKCFPEKNKPGEIAKYMETVKLLDYTEKPLYENLRDI 323 + NLKDP V+ +K + + + K P + EIA+++ L Y EKP Y+ L+ I +Sbjct: 817 NLKDPVAVQTAKTNLLDELPQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKI 996 + +Query: 324 L 324 + L +Sbjct: 997 L 999 + + +>AY228371 + Length = 1710 + + Score = 279 bits (714), Expect(2) = 6e-81 + Identities = 131/231 (56%), Positives = 172/231 (74%) + Frame = +3 + +Query: 94 EQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKT 153 + + ++KWI ++L YLG+P ++GSGL + G+SYRFM+M+R G DLQKI N F + T +Sbjct: 342 KSVKKWIERKQLDYLGIPLFYGSGLTEFKGRSYRFMVMERLGIDLQKISGQNGT-FKKST 518 + +Query: 154 VLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKEY 213 + VLQL +R+LD+LEYIHE+EYVHGD+KA+NLLL YKNPDQVYL DYGL+YRYCP G HK+Y +Sbjct: 519 VLQLGIRMLDVLEYIHENEYVHGDVKAANLLLGYKNPDQVYLADYGLSYRYCPNGNHKQY 698 + +Query: 214 KEDPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRD 273 + +E+P++ H+GTIEFTS+DAH GVA SRR D+EILGYCM++WL G LPWE NLKDP V+ +Sbjct: 699 QENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQT 878 + +Query: 274 SKIRYRENIASLMDKCFPEKNKPGEIAKYMETVKLLDYTEKPLYENLRDIL 324 + +K + + + K P + EIA+++ L Y EKP Y+ L+ IL +Sbjct: 879 AKTNLLDELPQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKIL 1031 + + + + Score = 42.0 bits (97), Expect(2) = 6e-81 + Identities = 27/61 (44%), Positives = 32/61 (52%), Gaps = 1/61 (1%) + Frame = +1 + +Query: 16 KRHLAEQFAVGEIITDMAKKEWKVGLPIGQGGFGCIYLA-DMNSSESVGSDAPCVVKVEP 74 + K L F G+++ DM +W +G IG GGFG IYLA N E DA VVKV +Sbjct: 184 KYKLPIPFPEGKVLDDMEGNQWVLGKKIGSGGFGLIYLAFPTNKPE---KDARHVVKVSK 354 + +Query: 75 S 75 + S +Sbjct: 355 S 357 + + +>AF514788 + Length = 1927 + + Score = 207 bits (528), Expect = 2e-53 + Identities = 114/316 (36%), Positives = 173/316 (54%), Gaps = 7/316 (2%) + Frame = +2 + +Query: 21 EQFAVGEIITDMAKKEWKVGLPIGQGGFGCIYLADMNSS---ESVGSDAPCVVKVEPSDN 77 + E G ++TD + ++WK+ + G +Y A S+ +S +K++ D +Sbjct: 626 EALPTGTVLTDESGRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD- 802 + +Query: 78 GPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRFGSD 137 + G LF E F+QRAAKP Q+ KW + L +P G G+H YRF+++ G +Sbjct: 803 GRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIPTCMGFGVHQDK---YRFLVLPSLGRS 973 + +Query: 138 LQKIYEANAKR-FSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQVYLV 196 + LQ + + K S ++VLQ++ R+LD LE++HE+EYVHG++ A N+ ++ ++ QV L +Sbjct: 974 LQSALDVSPKHVLSERSVLQVACRLLDALEFLHENEYVHGNVTAENIFVDPEDQSQVTLA 1153 + +Query: 197 DYGLAYRYCPEGVHKEYKEDPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLT 256 + YG A+RYCP G H Y E + H+G +EF S+D H G PSRR DL+ LGYCM++WL +Sbjct: 1154GYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLY 1333 + +Query: 257 GHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPEKNKPGEIAKYMETVKLLDYTEKPL 316 + G LPW + L + + + K ++ + + C + KY++ V L Y EKP +Sbjct: 1334GFLPWTNCLPNTEDIMKQKQKFVDKPGPFVGPCGHWIRPSETLQKYLKVVMALTYEEKPP 1513 + +Query: 317 YENLR---DILLQGLK 329 + Y LR + LLQ L+ +Sbjct: 1514YAMLRNNLEALLQDLR 1561 + + +>BC023556 + Length = 1843 + + Score = 189 bits (481), Expect = 6e-48 + Identities = 98/259 (37%), Positives = 148/259 (57%), Gaps = 4/259 (1%) + Frame = +3 + +Query: 21 EQFAVGEIITDMAKKEWKVGLPIGQGGFGCIYLADMNSS---ESVGSDAPCVVKVEPSDN 77 + E G ++TD + ++WK+ + G +Y A S+ +S +K++ D +Sbjct: 573 EALPTGTVLTDKSGRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD- 749 + +Query: 78 GPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRFGSD 137 + G LF E F+QRAAKP Q+ KW + L +P G G+H YRF+++ G +Sbjct: 750 GRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIPTCMGFGVHQDK---YRFLVLPSLGRS 920 + +Query: 138 LQKIYEANAKR-FSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQVYLV 196 + LQ + + K S ++VLQ++ R+LD LE++HE+EYVHG++ A N+ ++ ++ QV L +Sbjct: 921 LQSALDVSPKHVLSERSVLQVACRLLDALEFLHENEYVHGNVTAENIFVDPEDQSQVTLA 1100 + +Query: 197 DYGLAYRYCPEGVHKEYKEDPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLT 256 + YG A+RYCP G H Y E + H+G +EF S+D H G PSRR DL+ LGYCM++WL +Sbjct: 1101GYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLY 1280 + +Query: 257 GHLPWEDNLKDPKYVRDSK 275 + G LPW + L + + + K +Sbjct: 1281GFLPWTNCLPNTEDIMKQK 1337 + + +>BC003558 + Length = 2022 + + Score = 132 bits (331), Expect = 1e-30 + Identities = 101/352 (28%), Positives = 159/352 (45%), Gaps = 6/352 (1%) + Frame = +3 + +Query: 2 PRVKAAQAGRQSSAKRHLAE-QFAVGEIITDMAKKEWKVGLPIGQGGFGCIYLA-DMNSS 59 + PRV+ +A ++ A R A + VG +++G IG G FG IYL D+ + +Sbjct: 249 PRVQTQEAAGRAGANRAAAAMELRVGN--------RYRLGRKIGSGSFGDIYLGTDIAAG 404 + +Query: 60 ESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLH 119 + E V CV P L E K Y+ +Q + +++ G +Sbjct: 405 EEVAIKLECVKTKHPQ----LHIESKIYK------MMQGGVGIPTIRWCGAEG------- 533 + +Query: 120 DKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIK 179 + Y M+M+ G L+ ++ +++FS KTVL L+ +++ +EYIH ++H D+K +Sbjct: 534 -----DYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVK 698 + +Query: 180 ASNLLLNY-KNPDQVYLVDYGLAYRYCPEGVHKEYKEDPKRCHDGTIEFTSIDAHNGVAP 238 + N L+ K + VY++D+GLA +Y H+ + GT + SI+ H G+ +Sbjct: 699 PDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQ 878 + +Query: 239 SRRGDLEILGYCMIQWLTGHLPWED---NLKDPKYVRDSKIRYRENIASLMDKCFPEKNK 295 + SRR DLE LGY ++ + G LPW+ K KY R S+ + I L K +Sbjct: 879 SRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLC------KGY 1040 + +Query: 296 PGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIGSKDDGKLDLSVVENG 347 + P E A Y+ + L + +KP Y LR + G D D ++++ G +Sbjct: 1041PSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNMLKFG 1196 + + +>BC015775 + Length = 2106 + + Score = 132 bits (331), Expect = 1e-30 + Identities = 101/352 (28%), Positives = 159/352 (45%), Gaps = 6/352 (1%) + Frame = +2 + +Query: 2 PRVKAAQAGRQSSAKRHLAE-QFAVGEIITDMAKKEWKVGLPIGQGGFGCIYLA-DMNSS 59 + PRV+ +A ++ A R A + VG +++G IG G FG IYL D+ + +Sbjct: 257 PRVQTQEAAGRAGANRAAAAMELRVGN--------RYRLGRKIGSGSFGDIYLGTDIAAG 412 + +Query: 60 ESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLH 119 + E V CV P L E K Y+ +Q + +++ G +Sbjct: 413 EEVAIKLECVKTKHPQ----LHIESKIYK------MMQGGVGIPTIRWCGAEG------- 541 + +Query: 120 DKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIK 179 + Y M+M+ G L+ ++ +++FS KTVL L+ +++ +EYIH ++H D+K +Sbjct: 542 -----DYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVK 706 + +Query: 180 ASNLLLNY-KNPDQVYLVDYGLAYRYCPEGVHKEYKEDPKRCHDGTIEFTSIDAHNGVAP 238 + N L+ K + VY++D+GLA +Y H+ + GT + SI+ H G+ +Sbjct: 707 PDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQ 886 + +Query: 239 SRRGDLEILGYCMIQWLTGHLPWED---NLKDPKYVRDSKIRYRENIASLMDKCFPEKNK 295 + SRR DLE LGY ++ + G LPW+ K KY R S+ + I L K +Sbjct: 887 SRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLC------KGY 1048 + +Query: 296 PGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIGSKDDGKLDLSVVENG 347 + P E A Y+ + L + +KP Y LR + G D D ++++ G +Sbjct: 1049PSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNMLKFG 1204 + + + Database: /cluster/bluearc/markd/snpProtein/kgMrna.fa + Posted date: Nov 13, 2003 9:35 AM + Number of letters in database: 89,350,383 + Number of sequences in database: 37,452 + +Lambda K H + 0.317 0.137 0.410 + +Gapped +Lambda K H + 0.267 0.0410 0.140 + + +Matrix: BLOSUM62 +Gap Penalties: Existence: 11, Extension: 1 +Number of Hits to DB: 42,188,729 +Number of Sequences: 37452 +Number of extensions: 664653 +Number of successful extensions: 3374 +Number of sequences better than 10.0: 443 +Number of HSP's better than 10.0 without gapping: 1995 +Number of HSP's successfully gapped in prelim test: 138 +Number of HSP's that attempted gapping in prelim test: 1246 +Number of HSP's gapped (non-prelim): 2253 +length of query: 396 +length of database: 29,783,461 +effective HSP length: 109 +effective length of query: 287 +effective length of database: 25,701,193 +effective search space: 7376242391 +effective search space used: 7376242391 +frameshift window, decay const: 50, 0.1 +T: 13 +A: 40 +X1: 16 ( 7.3 bits) +X2: 38 (14.6 bits) +X3: 64 (24.7 bits) +S1: 41 (21.6 bits) +S2: 65 (29.6 bits)