02336754147822f5aa61ba13277123b2cc629001 markd Thu May 20 08:38:55 2021 -0700 Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies. diff --git src/utils/pslMap/tests/input/refSeqGen.psl src/utils/pslMap/tests/input/refSeqGen.psl new file mode 100644 index 0000000..3196f3b --- /dev/null +++ src/utils/pslMap/tests/input/refSeqGen.psl @@ -0,0 +1,2 @@ +4952 0 0 0 0 0 16 56781 + NM_033086 4952 0 4952 chr9 136372045 91078190 91139923 17 247,168,502,90,137,157,139,59,147,93,80,31,108,63,123,1913,895, 0,247,415,917,1007,1144,1301,1440,1499,1646,1739,1819,1850,1958,2021,2144,4057, 91078190,91078928,91079898,91106615,91107691,91109714,91113936,91114904,91117542,91119427,91121826,91123521,91124007,91126017,91133564,91136459,91139028, +2251 4 0 0 1 1 2 7768 - NM_005014 2263 7 2263 chr9 136372045 90517946 90527969 4 225,997,956,77, 0,226,1223,2179, 90517946,90518171,90520309,90527892,