02336754147822f5aa61ba13277123b2cc629001
markd
  Thu May 20 08:38:55 2021 -0700
Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.

diff --git src/utils/pslRc/tests/expected/transTest.psl src/utils/pslRc/tests/expected/transTest.psl
new file mode 100644
index 0000000..7649c51
--- /dev/null
+++ src/utils/pslRc/tests/expected/transTest.psl
@@ -0,0 +1,12 @@
+652	257	0	0	0	0	2	16618	--	NM_001000613	936	0	909	chr1	245522847	42314	59841	3	46,701,162,	27,73,774,	245463006,245469173,245480371,
+749	166	0	0	0	0	0	0	--	NM_146400	966	15	930	chr1	245522847	52799	53714	1	915,	36,	245469133,
+771	167	0	0	0	0	0	0	--	NM_001000369	939	1	939	chr1	245522847	52812	53750	1	938,	0,	245469097,
+500	154	0	0	2	504	5	6805	-+	NM_001020776	1480	132	1290	chr1	245522847	92653606	92661065	6	184,164,135,30,84,57,	190,374,538,673,1057,1291,	92653606,92656170,92657928,92658178,92660442,92661008,
+760	155	0	0	0	0	0	0	-+	NM_001000579	939	0	915	chr1	245522847	660982	661897	1	915,	24,	660982,
+760	155	0	0	0	0	0	0	-+	NM_001000608	939	0	915	chr1	245522847	660982	661897	1	915,	24,	660982,
+375	67	0	0	3	201	4	1810	-+	AK004209	954	0	643	chr1	245522847	4558	6810	6	107,17,72,109,50,87,	311,431,448,520,630,867,	4558,4672,4829,5658,5767,6723,
+1053	181	0	0	3	200	10	8963	-+	AK033616	1764	80	1514	chr1	245522847	4558	14755	12	107,17,72,109,50,195,60,69,141,147,112,155,	250,370,387,459,569,805,1000,1060,1129,1270,1417,1529,	4558,4672,4829,5658,5767,6723,7095,7158,7464,7777,8130,14600,
+1057	183	0	0	3	200	10	8963	-+	AJ304796	1808	29	1469	chr1	245522847	4558	14761	12	107,17,72,110,49,195,60,69,141,147,112,161,	339,459,476,548,659,894,1089,1149,1218,1359,1506,1618,	4558,4672,4829,5658,5768,6723,7095,7158,7464,7777,8130,14600,
+41	10	0	0	0	0	0	0	+-	AA542579	418	367	418	chr1	245522847	2866	2917	1	51,	367,	245519930,
+401	62	0	0	1	44	4	6780	+-	AA388728	507	0	507	chr1	245522847	7488	14731	5	90,40,69,147,117,	0,90,174,243,390,	245508116,245508207,245514648,245514923,245515242,
+344	55	0	0	1	31	3	6768	+-	AA866967	449	15	445	chr1	245522847	7576	14743	4	144,79,147,29,	15,190,269,416,	245508104,245514638,245514923,245515242,