b08030471bfa4e4ba8cc033e30be7eec292188d4
max
  Fri May 21 01:29:35 2021 -0700
adding a special dev-only cadd trackDb for ticket on disappearing indels, refs #24836

diff --git src/hg/makeDb/trackDb/human/caddAlpha.ra src/hg/makeDb/trackDb/human/caddAlpha.ra
new file mode 100644
index 0000000..fa11804
--- /dev/null
+++ src/hg/makeDb/trackDb/human/caddAlpha.ra
@@ -0,0 +1,95 @@
+track caddSuper
+shortLabel CADD
+longLabel CADD 1.6 Score for all single-basepair mutations and selected insertions/deletions
+superTrack on hide
+type bed
+visibility hide
+group phenDis
+color 100,130,160
+pennantIcon New red ../goldenPath/newsarch.html#030221 "Released Mar. 03, 2021"
+
+track cadd
+shortLabel CADD
+longLabel CADD 1.6 Score for all possible single-basepair mutations (zoom in to show exact score on mouse over, same basepair = score 0.0)
+type bigWig
+compositeTrack on
+parent caddSuper
+visibility dense
+#maxWindowToQuery 500000
+group phenDis
+color 100,130,160
+html caddSuper
+maxWindowToDraw 10000000
+mouseOverFunction noAverage
+
+        track caddA
+        shortLabel Mutation: A
+        longLabel CADD 1.6 Score: Mutation is A
+        type bigWig
+        parent cadd on
+        visibility dense
+        bigDataUrl /gbdb/$D/cadd/a.bw
+        maxHeightPixels 128:20:8
+        viewLimits 0:30
+        viewLimitsMax 0:100
+
+        track caddC
+        shortLabel Mutation: C
+        longLabel CADD 1.6 Score: Mutation is C
+        type bigWig
+        parent cadd on
+        visibility dense
+        bigDataUrl /gbdb/$D/cadd/c.bw
+        maxHeightPixels 128:20:8
+        viewLimits 0:30
+        viewLimitsMax 0:100
+
+        track caddG
+        shortLabel Mutation: G
+        longLabel CADD 1.6 Score: Mutation is G
+        type bigWig
+        parent cadd on
+        visibility dense
+        bigDataUrl /gbdb/$D/cadd/g.bw
+        maxHeightPixels 128:20:8
+        viewLimits 0:30
+        viewLimitsMax 0:100
+
+        track caddT
+        shortLabel Mutation: T
+        longLabel CADD 1.6 Score: Mutation is T
+        type bigWig
+        parent cadd on
+        visibility dense
+        bigDataUrl /gbdb/$D/cadd/t.bw
+        maxHeightPixels 128:20:8
+        viewLimits 0:30
+        viewLimitsMax 0:100
+
+track caddIns
+shortLabel Insertions
+longLabel CADD 1.6 Score: Insertions - label is length of insertion
+type bigBed 9 +
+parent caddSuper
+visibility dense
+bigDataUrl /gbdb/$D/cadd/ins.bb
+mouseOver Mutation: $change CADD Phred score: $phred
+html caddSuper
+scoreFilterLimits 0:100
+#maxWindowCoverage 40000
+#maxItems 100000
+#maxWindowToDraw 9000000
+
+track caddDel
+shortLabel Deletions
+longLabel CADD 1.6 Score: Deletions - label is length of deletion
+type bigBed 9 +
+parent caddSuper
+visibility dense
+bigDataUrl /gbdb/$D/cadd/del.bb
+mouseOver Mutation: $change CADD Phred score: $phred
+html caddSuper
+scoreFilterLimits 0:100
+#maxWindowCoverage 40000
+#maxItems 100000
+#maxWindowToDraw 9000000