15a68c43d81746a20b74ef8a33d2eba34b366e4a dschmelt Wed Apr 21 13:54:43 2021 -0700 Fixing type and adding credit line No RM diff --git src/hg/htdocs/goldenPath/help/covidBrowserIntro.html src/hg/htdocs/goldenPath/help/covidBrowserIntro.html index 662966c..c453416 100755 --- src/hg/htdocs/goldenPath/help/covidBrowserIntro.html +++ src/hg/htdocs/goldenPath/help/covidBrowserIntro.html @@ -1,43 +1,44 @@ <!DOCTYPE html> +<!--Written by Daniel Schmelter March 2021 --> <!--#set var="TITLE" value="COVID Browser Intro" --> <!--#set var="ROOT" value="../.." --> <!--#include virtual="$ROOT/inc/gbPageStart.html" --> <h1>Introduction to the SARS-CoV-2 Genome Browser</h1> <div class="row"> <div class="col-sm-6"> <p> The UCSC Genome Browser is an open-source, interactive sequence visualization tool that has been a cornerstone of genomics since we released the first human genome assembly 20 years ago. Cited in more than 37,000 scientific articles and used by thousands of researchers each day; it allows for cross-referencing of research, clinical, and epidemiology data against reference genomes, including <a href="../../cgi-bin/hgGateway?db=wuhCor1">SARS-CoV-2</a>. This data is continuously updated and added to as new datasets become available. For a more thorough description, please reference our <a href="https://www.nature.com/articles/s41588-020-0700-8" target="_blank"> SARS-CoV-2 Genome Browser Nature Genetics paper</a>. We also post updates and COVID Browser resources to out <a href="../../covid19.html">COVID-19 Browser home page</a>.</p> <p> This guide will go through some of the most important use cases of the SARS-CoV-2 Genome Browser. These topics include:</p> <ul> <li><a href="#nav">Orientation and Navigation</a></li> <li><a href="#genes">Gene Data and Sequence Alignments</a></li> <li><a href="#var">Variation and Immunology data</a></li> -<li><a href="#usher">Phylogenetic Contact Tracing using USHER</a></li> +<li><a href="#usher">Phylogenetic Contact Tracing using UShER</a></li> <li><a href="#data">Other tools and data downloads</a></li> <li><a href="#support">Support and Collaboration</a></li> </ul> <p> For those who prefer a video explanation, we also have the following tutorial:</p> </div> <div class="col-md-6"> <p> <iframe width="560" height="315" src="https://www.youtube.com/embed/Ee6h0xyZDOM?rel=0" frameborder="0" allow="accelerometer; autoplay; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe></p> </div> </div>