bf4b7a0faf40fc5c2c30fb25e31440e9d5b1d142
hiram
  Thu May 13 10:57:12 2021 -0700
Added canFam6 dog; refs #27546

diff --git src/hg/makeDb/genbank/etc/genbank.conf src/hg/makeDb/genbank/etc/genbank.conf
index 0ef4024..405535c 100644
--- src/hg/makeDb/genbank/etc/genbank.conf
+++ src/hg/makeDb/genbank/etc/genbank.conf
@@ -3273,30 +3273,48 @@
 canFam5.lift = /hive/data/genomes/canFam5/jkStuff/canFam5.5Kgaps.lft
 canFam5.align.unplacedChroms = chrUn_*
 canFam5.refseq.mrna.native.pslCDnaFilter  = ${finished.refseq.mrna.native.pslCDnaFilter}
 canFam5.refseq.mrna.xeno.pslCDnaFilter    = ${finished.refseq.mrna.xeno.pslCDnaFilter}
 canFam5.genbank.mrna.native.pslCDnaFilter = ${finished.genbank.mrna.native.pslCDnaFilter}
 canFam5.genbank.mrna.xeno.pslCDnaFilter   = ${finished.genbank.mrna.xeno.pslCDnaFilter}
 canFam5.genbank.est.native.pslCDnaFilter  = ${finished.genbank.est.native.pslCDnaFilter}
 canFam5.refseq.mrna.native.load = yes
 canFam5.refseq.mrna.xeno.load = yes
 # DO NOT NEED genbank.mrna.xeno except for human, mouse
 canFam5.genbank.mrna.xeno.load = yes
 canFam5.downloadDir = canFam5
 canFam5.upstreamGeneTbl = refGene
 canFam5.perChromTables = no
 
+# canFam6 (GCF_000002285.5 Dog10K Boxer Tasha)
+canFam6.serverGenome = /hive/data/genomes/canFam6/canFam6.2bit
+canFam6.ooc = /hive/data/genomes/canFam6/jkStuff/canFam6.11.ooc
+canFam6.lift = /hive/data/genomes/canFam6/jkStuff/canFam6.gaps.lft
+canFam6.align.unplacedChroms = chrUn_*
+canFam6.refseq.mrna.native.pslCDnaFilter  = ${finished.refseq.mrna.native.pslCDnaFilter}
+canFam6.refseq.mrna.xeno.pslCDnaFilter    = ${finished.refseq.mrna.xeno.pslCDnaFilter}
+canFam6.genbank.mrna.native.pslCDnaFilter = ${finished.genbank.mrna.native.pslCDnaFilter}
+canFam6.genbank.mrna.xeno.pslCDnaFilter   = ${finished.genbank.mrna.xeno.pslCDnaFilter}
+canFam6.genbank.est.native.pslCDnaFilter  = ${finished.genbank.est.native.pslCDnaFilter}
+canFam6.refseq.mrna.native.load = yes
+canFam6.refseq.mrna.xeno.load = yes
+# DO NOT NEED genbank.mrna.xeno except for human, mouse
+canFam6.genbank.mrna.xeno.load = yes
+canFam6.downloadDir = canFam6
+canFam6.upstreamGeneTbl = refGene
+canFam6.perChromTables = no
+
 # ailMel1 (panda)
 ailMel1.serverGenome = /hive/data/genomes/ailMel1/ailMel1.2bit
 ailMel1.lift = no
 ailMel1.ooc = /hive/data/genomes/ailMel1/ailMel1.11.ooc
 ailMel1.refseq.mrna.native.pslCDnaFilter  = ${lowCover.refseq.mrna.native.pslCDnaFilter}
 ailMel1.refseq.mrna.xeno.pslCDnaFilter    = ${lowCover.refseq.mrna.xeno.pslCDnaFilter}
 ailMel1.genbank.mrna.native.pslCDnaFilter = ${lowCover.genbank.mrna.native.pslCDnaFilter}
 ailMel1.genbank.mrna.xeno.pslCDnaFilter   = ${lowCover.genbank.mrna.xeno.pslCDnaFilter}
 ailMel1.genbank.est.native.pslCDnaFilter  = ${lowCover.genbank.est.native.pslCDnaFilter}
 ailMel1.refseq.mrna.native.load = no
 ailMel1.refseq.mrna.xeno.load = yes
 # DO NOT NEED genbank.mrna.xeno except for human, mouse
 ailMel1.genbank.mrna.xeno.load = yes
 ailMel1.downloadDir = ailMel1
 ailMel1.perChromTables = no